* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pbdMPI.Rcheck’ * using R Under development (unstable) (2025-02-23 r87804) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘pbdMPI/DESCRIPTION’ ... OK * this is package ‘pbdMPI’ version ‘0.5-2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘pbdMPI’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/pbdMPI-00install.html' for details. * used C compiler: ‘Debian clang version 19.1.7 (1+b1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE possible bashism in configure.ac line 73 (test -a/-o): if test -n "${MPI_INCLUDE_PATH}" -a -z "${MPI_LIBPATH}" ; then possible bashism in configure.ac line 76 (test -a/-o): if test -z "${MPI_INCLUDE_PATH}" -a -n "${MPI_LIBPATH}" ; then possible bashism in configure.ac line 111 (test -a/-o): if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "OPENMPI" ; then possible bashism in configure.ac line 115 (test -a/-o): if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then possible bashism in configure.ac line 154 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 169 (test -a/-o): if test "$TMP_INC" = "F" -o "$TMP_LIB" = "F" ; then possible bashism in configure.ac line 214 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 239 (test -a/-o): if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "IBMMPI" ; then possible bashism in configure.ac line 243 (test -a/-o): if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then possible bashism in configure.ac line 275 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 297 (test -a/-o): if test "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH" -o "$MPITYPE" = "MPICH3" ; then possible bashism in configure.ac line 301 (test -a/-o): if test "$SED" != "F" -a "$MPICC" != "F" ; then possible bashism in configure.ac line 353 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 368 (test -a/-o): if test "$TMP_INC" = "F" -o "$TMP_LIB" = "F" ; then possible bashism in configure.ac line 413 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 779 (test -a/-o): if test "$MPITYPE" = "OPENMPI" -o "$MPITYPE" = "IBMMPI" -o "$MPITYPE" = "LAM" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH3" -o "$MPITYPE" = "INTELMPI" ; then possible bashism in configure.ac line 837 (test -a/-o): if test "X$MPIRUN" = "X" -o "X$MPIEXEC" = "X" -o "X$ORTERUN" = "X" ; then possible bashism in configure.ac line 842 (test -a/-o): if test "$MPITYPE" = "MPICH" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH3" -o "$MPITYPE" = "MPICH3" ; then possible bashism in configure.ac line 846 ($"foo" should be eval_gettext "foo"): if test $"X$TMP_MODULE" != "X" ; then * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s/29s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/32s] OK * checking for unstated dependencies in ‘demo’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s/10s] OK * checking PDF version of manual ... [8s/10s] OK * checking HTML version of manual ... [3s/6s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 NOTE