* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/omopgenerics.Rcheck’
* using R Under development (unstable) (2025-02-23 r87804)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘omopgenerics/DESCRIPTION’ ... OK
* this is package ‘omopgenerics’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘omopgenerics’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/omopgenerics-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/26s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [21s/27s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [135s/70s] ERROR
  Running ‘testthat.R’ [135s/70s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(omopgenerics)
  
  Attaching package: 'omopgenerics'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > test_check("omopgenerics")
  Starting 2 test processes
  [ FAIL 4 | WARN 0 | SKIP 2 | PASS 1307 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • On CRAN (2): 'test-assert.R:344:3', 'test-utilities.R:222:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-exportCodelist.R:6:3'): test export codelist json ──────────────
  Error in `tempdir(check)`: NA in coercion to Rboolean
  Backtrace:
      â–†
   1. └─base::tempdir("concepts") at test-exportCodelist.R:6:3
  ── Error ('test-exportCodelist.R:42:3'): test export codelist csv ──────────────
  Error in `tempdir(check)`: NA in coercion to Rboolean
  Backtrace:
      â–†
   1. └─base::tempdir("concepts") at test-exportCodelist.R:42:3
  ── Error ('test-exportConceptSetExpression.R:5:3'): test export concept set expression json ──
  Error in `tempdir(check)`: NA in coercion to Rboolean
  Backtrace:
      â–†
   1. └─base::tempdir("concept_expression") at test-exportConceptSetExpression.R:5:3
  ── Error ('test-exportConceptSetExpression.R:43:3'): test export concept set expression csv ──
  Error in `tempdir(check)`: NA in coercion to Rboolean
  Backtrace:
      â–†
   1. └─base::tempdir("concept_expression") at test-exportConceptSetExpression.R:43:3
  
  [ FAIL 4 | WARN 0 | SKIP 2 | PASS 1307 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/35s] OK
* checking PDF version of manual ... [8s/10s] OK
* checking HTML version of manual ... [3s/7s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR