* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nestedmodels.Rcheck’ * using R Under development (unstable) (2025-02-23 r87804) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘nestedmodels/DESCRIPTION’ ... OK * this is package ‘nestedmodels’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘nestedmodels’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/nestedmodels-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [5s/6s] OK * checking whether the package can be loaded with stated dependencies ... [4s/5s] OK * checking whether the package can be unloaded cleanly ... [4s/4s] OK * checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK * checking whether the namespace can be unloaded cleanly ... [4s/6s] OK * checking loading without being on the library search path ... [4s/5s] OK * checking whether startup messages can be suppressed ... [4s/7s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s/28s] OK * checking Rd files ... [0s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: step_nest.Rd: tidy.recipe Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [14s/16s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed nested_resamples 4.888 0.077 5.652 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [21s/39s] ERROR Running ‘testthat.R’ [21s/39s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(nestedmodels) > > test_check("nestedmodels") Loading required package: Matrix Loaded glmnet 4.1-8 Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error in fit(...) : `penalty` must be a number or `NULL`, not a call. Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors Error: $ operator is invalid for atomic vectors [ FAIL 1 | WARN 1 | SKIP 4 | PASS 173 ] â•â• Skipped tests (4) â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• • On CRAN (4): 'test-autoplot.R:20:3', 'test-fit_xy.R:39:3', 'test-nested_model.R:24:3', 'test-step_nest.R:10:3' â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• ── Error ('test-multi_predict.R:13:3'): multi_predict.nested_model_fit works ─── Error in `fix_predictions(pred, model_map$data)`: All of the predictions failed. Backtrace: â–† 1. ├─base::suppressWarnings(...) at test-multi_predict.R:13:3 2. │ └─base::withCallingHandlers(...) 3. ├─parsnip::multi_predict(...) 4. └─nestedmodels:::multi_predict.nested_model_fit(...) 5. └─nestedmodels:::fix_predictions(pred, model_map$data) 6. └─cli::cli_abort(c("All of the predictions failed.")) 7. └─rlang::abort(...) [ FAIL 1 | WARN 1 | SKIP 4 | PASS 173 ] Deleting unused snapshots: • autoplot/combined-autoplot-results.svg Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [16s/22s] OK * checking PDF version of manual ... [5s/6s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR, 1 NOTE