* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/nestedmodels.Rcheck’
* using R Under development (unstable) (2025-02-23 r87804)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘nestedmodels/DESCRIPTION’ ... OK
* this is package ‘nestedmodels’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘nestedmodels’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/nestedmodels-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/6s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/6s] OK
* checking loading without being on the library search path ... [4s/5s] OK
* checking whether startup messages can be suppressed ... [4s/7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/28s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  step_nest.Rd: tidy.recipe
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/16s] OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
nested_resamples 4.888  0.077   5.652
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [21s/39s] ERROR
  Running ‘testthat.R’ [21s/39s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(nestedmodels)
  > 
  > test_check("nestedmodels")
  Loading required package: Matrix
  Loaded glmnet 4.1-8
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error in fit(...) : `penalty` must be a number or `NULL`, not a call.
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  Error: $ operator is invalid for atomic vectors
  [ FAIL 1 | WARN 1 | SKIP 4 | PASS 173 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • On CRAN (4): 'test-autoplot.R:20:3', 'test-fit_xy.R:39:3',
    'test-nested_model.R:24:3', 'test-step_nest.R:10:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-multi_predict.R:13:3'): multi_predict.nested_model_fit works ───
  Error in `fix_predictions(pred, model_map$data)`: All of the predictions failed.
  Backtrace:
      â–†
   1. ├─base::suppressWarnings(...) at test-multi_predict.R:13:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─parsnip::multi_predict(...)
   4. └─nestedmodels:::multi_predict.nested_model_fit(...)
   5.   └─nestedmodels:::fix_predictions(pred, model_map$data)
   6.     └─cli::cli_abort(c("All of the predictions failed."))
   7.       └─rlang::abort(...)
  
  [ FAIL 1 | WARN 1 | SKIP 4 | PASS 173 ]
  Deleting unused snapshots:
  • autoplot/combined-autoplot-results.svg
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [16s/22s] OK
* checking PDF version of manual ... [5s/6s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE