* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/mlr3pipelines.Rcheck’ * using R Under development (unstable) (2025-02-23 r87804) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘mlr3pipelines/DESCRIPTION’ ... OK * this is package ‘mlr3pipelines’ version ‘0.7.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘mlr3pipelines’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/mlr3pipelines-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/2s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [91s/146s] OK * checking Rd files ... [4s/7s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [48s/70s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mlr_graphs_ovr 4.150 0.093 6.949 mlr_pipeops_nmf 4.113 0.052 5.526 mlr_pipeops_tunethreshold 3.477 0.050 5.097 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [17m/12m] ERROR Running ‘testthat.R’ [17m/12m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)) { + library("checkmate") + library("testthat") + library("mlr3") + library("paradox") + library("mlr3pipelines") + test_check("mlr3pipelines") + } Starting 2 test processes [ FAIL 1 | WARN 0 | SKIP 90 | PASS 12843 ] â•â• Skipped tests (90) â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• • On CRAN (87): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3', 'test_Graph.R:281:3', 'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3', 'test_learner_weightedaverage.R:105:3', 'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3', 'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_branching.R:26:3', 'test_GraphLearner.R:5:3', 'test_GraphLearner.R:212:3', 'test_GraphLearner.R:334:3', 'test_GraphLearner.R:399:3', 'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:9:3', 'test_pipeop_classweights.R:10:3', 'test_pipeop_classbalancing.R:10:3', 'test_pipeop_colroles.R:10:3', 'test_pipeop_colapply.R:9:3', 'test_pipeop_copy.R:5:3', 'test_pipeop_encode.R:21:3', 'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:13:3', 'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:38:3', 'test_pipeop_encodelmer.R:81:3', 'test_pipeop_ensemble.R:6:3', 'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3', 'test_pipeop_fixfactors.R:9:3', 'test_pipeop_filter.R:7:3', 'test_pipeop_histbin.R:9:3', 'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3', 'test_pipeop_kernelpca.R:9:3', 'test_pipeop_imputelearner.R:43:3', 'test_pipeop_learner.R:17:3', 'test_pipeop_learnercv.R:31:3', 'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3', 'test_pipeop_nmf.R:9:3', 'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3', 'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:8:3', 'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:10:3', 'test_pipeop_renamecolumns.R:11:3', 'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:9:3', 'test_pipeop_scale.R:8:3', 'test_pipeop_scale.R:18:3', 'test_pipeop_scalemaxabs.R:7:3', 'test_pipeop_scalerange.R:8:3', 'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:7:3', 'test_pipeop_subsample.R:10:3', 'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3', 'test_pipeop_textvectorizer.R:38:3', 'test_pipeop_textvectorizer.R:190:3', 'test_pipeop_tomek.R:7:3', 'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3', 'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:8:3', 'test_typecheck.R:188:3' • Skipping (1): 'test_GraphLearner.R:1265:3' • empty test (2): 'test_pipeop_missind.R:101:1', 'test_ppl.R:61:1' â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• ── Error ('test_dictionary.R:251:3'): Cannot add pipeops with keys that invalidates the convenience for id incrementation ── Error in ``$.R6`(mlr_pipeops, clone)`: R6 class DictionaryPipeOp/Dictionary/R6 does not have slot 'clone'! Backtrace: â–† 1. ├─mlr_pipeops$clone at test_dictionary.R:251:3 2. └─global `$.R6`(mlr_pipeops, clone) at test_dictionary.R:251:3 [ FAIL 1 | WARN 0 | SKIP 90 | PASS 12843 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [5s/7s] OK * checking PDF version of manual ... [28s/46s] OK * checking HTML version of manual ... [17s/24s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR