• using R Under development (unstable) (2024-11-20 r87352)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘mice/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mice’ version ‘3.16.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘mice’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 19.1.3 (2)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [40s/54s] OK
• checking Rd files ... [2s/3s] NOTE checkRd: (-1) ampute.Rd:143: Lost braces    143 | we refer to \doi{10.1177/0049124118799376}{Schouten and Vink, 2018}.        | ^ checkRd: (-1) ampute.Rd:188: Lost braces    188 | \doi{10.1080/00949655.2018.1491577}{Schouten, Lugtig and Vink, 2018}.        | ^ checkRd: (-1) ampute.Rd:223: Lost braces    223 | Schouten, R.M. and Vink, G. (2018){The Dance of the Mechanisms: How Observed Information Influences the Validity of Missingness Assumptions}.        | ^ checkRd: (-1) mice.Rd:348: Lost braces; missing escapes or markup?    348 | The \pkg{mice} software was published in the {Journal of Statistical Software} (Van Buuren and Groothuis-Oudshoorn, 2011). \doi{10.18637/jss.v045.i03}        | ^ checkRd: (-1) mice.impute.pmm.Rd:87: Lost braces; missing escapes or markup?     87 | \item{Construct \eqn{n_0} sets \eqn{Z_j}, each containing \eqn{d} candidate donors, from Y_{obs} such that \eqn{\sum_d\dot\eta(i,j)} is minimum for all \eqn{j=1,\dots,n_0}. Break ties randomly.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   bwplot.mads.Rd: Lattice   bwplot.mids.Rd: lattice   densityplot.mids.Rd: lattice   mice.impute.cart.Rd: rpart.control   plot.mids.Rd: panel.xyplot   stripplot.mids.Rd: lattice   xyplot.mads.Rd: lattice, Lattice   xyplot.mids.Rd: lattice Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [38s/50s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [61s/100s] OK   Running ‘testthat.R’ [61s/100s]
• checking PDF version of manual ... [14s/19s] OK
• checking HTML version of manual ... [10s/17s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs