- using R Under development (unstable) (2024-11-15 r87338)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.3 (2)
Debian flang-new version 19.1.3 (2)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘metan/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘metan’ version ‘1.18.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘metan’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/5s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking whether startup messages can be suppressed ... [4s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [75s/97s] OK
- checking Rd files ... [3s/4s] NOTE
checkRd: (-1) blup_indexes.Rd:98: Lost braces
98 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) blup_indexes.Rd:98: Lost braces
98 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) cv_ammi.Rd:104: Lost braces
104 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro,
| ^
checkRd: (-1) cv_ammi.Rd:104: Lost braces
104 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro,
| ^
checkRd: (-1) cv_blup.Rd:121: Lost braces
121 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro,
| ^
checkRd: (-1) cv_blup.Rd:121: Lost braces
121 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro,
| ^
checkRd: (-1) gamem_met.Rd:177: Lost braces
177 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) gamem_met.Rd:177: Lost braces
177 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) ge_stats.Rd:143: Lost braces
143 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) ge_stats.Rd:143: Lost braces
143 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) get_model_data.Rd:378: Lost braces
378 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) get_model_data.Rd:378: Lost braces
378 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) get_model_data.Rd:384: Lost braces
384 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel.
| ^
checkRd: (-1) get_model_data.Rd:384: Lost braces
384 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel.
| ^
checkRd: (-1) mps.Rd:179: Lost braces
179 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) mps.Rd:179: Lost braces
179 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) mtmps.Rd:108: Lost braces
108 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and
| ^
checkRd: (-1) mtmps.Rd:108: Lost braces
108 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and
| ^
checkRd: (-1) mtsi.Rd:128: Lost braces
128 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and
| ^
checkRd: (-1) mtsi.Rd:128: Lost braces
128 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and
| ^
checkRd: (-1) plot.mtmps.Rd:112: Lost braces
112 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press).
| ^
checkRd: (-1) plot.mtmps.Rd:112: Lost braces
112 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press).
| ^
checkRd: (-1) plot.mtsi.Rd:107: Lost braces
107 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press).
| ^
checkRd: (-1) plot.mtsi.Rd:107: Lost braces
107 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, B.G. Sari, and M.I. Diel. 2019. Mean performance and stability in multi-environment trials II: Selection based on multiple traits. Agron. J. (in press).
| ^
checkRd: (-1) plot_scores.Rd:274: Lost braces
274 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) plot_scores.Rd:274: Lost braces
274 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) waas.Rd:125: Lost braces
125 | override the number of significant axes according to the argument code{prob}.
| ^
checkRd: (-1) waas.Rd:191: Lost braces
191 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro,
| ^
checkRd: (-1) waas.Rd:191: Lost braces
191 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro,
| ^
checkRd: (-1) waas_means.Rd:116: Lost braces
116 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) waas_means.Rd:116: Lost braces
116 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) waasb.Rd:253: Lost braces
253 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) waasb.Rd:253: Lost braces
253 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) wsmp.Rd:92: Lost braces
92 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
checkRd: (-1) wsmp.Rd:92: Lost braces
92 | Olivoto, T., A.D.C. L{\'{u}}cio, J.A.G. da silva, V.S. Marchioro, V.Q. de
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ge_stats.Rd: polar
path_coeff.Rd: dplyr_tidy_select
utils_as.Rd: dplyr_tidy_select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [8s/9s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [71s/85s] OK
- checking PDF version of manual ... [17s/27s] OK
- checking HTML version of manual ... [13s/23s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs