* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘linkcomm’ ...
** package ‘linkcomm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.6 (1)’
using C++ compiler: ‘Debian clang version 19.1.6 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpzliu2T/R.INSTALL2ad5f0423cfcdb/linkcomm/src'
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c OCG_algorithm.c -o OCG_algorithm.o
OCG_algorithm.c:571:3: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  571 |   k=0;
      |   ^
OCG_algorithm.c:568:2: note: previous statement is here
  568 |  for(j=0;j<CardMax;j++)
      |  ^
OCG_algorithm.c:445:52: warning: variable 'flag3' set but not used [-Wunused-but-set-variable]
  445 |   int   NbY, Nl, Long, NewLong, cli, flag1, flag2, flag3;
      |                                                    ^
OCG_algorithm.c:794:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
  794 |       for (k=0; k<N; k++) Clas[k]=0;
      |       ^
OCG_algorithm.c:790:5: note: previous statement is here
  790 |     for (j=0; j<i; j++)
      |     ^
OCG_algorithm.c:435:26: warning: variable 'Somcard' set but not used [-Wunused-but-set-variable]
  435 |   int Adj, NbAdj, mis=0, Somcard=0;
      |                          ^
OCG_algorithm.c:879:15: warning: variable 'NbElEl' set but not used [-Wunused-but-set-variable]
  879 |   int           ncard, NbElEl=0;
      |                        ^
5 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c edge_duplicates.cpp -o edge_duplicates.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c linkcomm_edgesims.cpp -o linkcomm_edgesims.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c linkcomm_edgesims_all.cpp -o linkcomm_edgesims_all.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c linkcomm_functions.cpp -o linkcomm_functions.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c linkcomm_hclust.cpp -o linkcomm_hclust.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c linkcomm_init.c -o linkcomm_init.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c linkcomm_linkdensities.cpp -o linkcomm_linkdensities.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c linkcommhclust_order.cpp -o linkcommhclust_order.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c read_OCG.cpp -o read_OCG.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o linkcomm.so OCG_algorithm.o edge_duplicates.o linkcomm_edgesims.o linkcomm_edgesims_all.o linkcomm_functions.o linkcomm_hclust.o linkcomm_init.o linkcomm_linkdensities.o linkcommhclust_order.o read_OCG.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpzliu2T/R.INSTALL2ad5f0423cfcdb/linkcomm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpzliu2T/R.INSTALL2ad5f0423cfcdb/linkcomm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpzliu2T/R.INSTALL2ad5f0423cfcdb/linkcomm/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-linkcomm/00new/linkcomm/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (linkcomm)