* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/latentcor.Rcheck’
* using R Under development (unstable) (2025-02-23 r87804)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘latentcor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘latentcor’ version ‘2.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘latentcor’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/latentcor-00install.html' for details.
* used C compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/7s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
* checking whether the package can be unloaded cleanly ... [4s/6s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
* checking whether the namespace can be unloaded cleanly ... [5s/7s] OK
* checking loading without being on the library search path ... [5s/6s] OK
* checking whether startup messages can be suppressed ... [5s/7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/30s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) evaluation.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evaluation.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:36-37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_types.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) interpolation.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) interpolation.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) latentcor.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  latentcor.Rd: nearPD
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/7s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [9s/13s] OK
  Running ‘testthat.R’ [9s/12s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s/27s] OK
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 2 NOTEs