* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/itsdm.Rcheck’ * using R Under development (unstable) (2025-02-23 r87804) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘itsdm/DESCRIPTION’ ... OK * this is package ‘itsdm’ version ‘0.2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘itsdm’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/itsdm-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [13s/17s] OK * checking whether the package can be loaded with stated dependencies ... [13s/15s] OK * checking whether the package can be unloaded cleanly ... [13s/16s] OK * checking whether the namespace can be loaded with stated dependencies ... [13s/16s] OK * checking whether the namespace can be unloaded cleanly ... [13s/16s] OK * checking loading without being on the library search path ... [13s/17s] OK * checking whether startup messages can be suppressed ... [14s/16s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [66s/84s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: cmcc_bioclim.Rd: sf, sfc detect_envi_change.Rd: st_as_stars, read_stars, explain, geom_smooth dim_reduce.Rd: sf, sfc future_cmcc_bioclim.Rd: sf, sfc future_worldclim2.Rd: sf, sfc independent_response.Rd: st_as_stars, read_stars isotree_po.Rd: isolation.forest, sf mainland_africa.Rd: sf, sfc marginal_response.Rd: st_as_stars, read_stars plot.EnvironmentalOutlier.Rd: geom_sf plot.ShapDependence.Rd: geom_smooth shap_dependence.Rd: st_as_stars, read_stars, explain shap_spatial_response.Rd: st_as_stars, read_stars, explain spatial_response.Rd: st_as_stars, read_stars, explain suspicious_env_outliers.Rd: outlier.tree, crs, sf variable_analysis.Rd: st_as_stars, read_stars, explain variable_contrib.Rd: explain worldclim2.Rd: sf, sfc Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [49s/61s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed dim_reduce 14.841 0.177 18.515 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/6s] OK * checking PDF version of manual ... [7s/9s] OK * checking HTML version of manual ... [3s/5s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 NOTE