* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/httk.Rcheck’ * using R Under development (unstable) (2025-02-23 r87804) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘httk/DESCRIPTION’ ... OK * this is package ‘httk’ version ‘2.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘httk’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/httk-00install.html' for details. * used C compiler: ‘Debian clang version 19.1.7 (1+b1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s/4s] OK * checking whether the package can be loaded with stated dependencies ... [3s/3s] OK * checking whether the package can be unloaded cleanly ... [3s/4s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK * checking whether the namespace can be unloaded cleanly ... [3s/4s] OK * checking loading without being on the library search path ... [3s/4s] OK * checking whether startup messages can be suppressed ... [3s/5s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [50s/62s] OK * checking Rd files ... [8s/11s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/2s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [84s/104s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed solve_fetal_pbtk 7.185 0.070 8.883 parameterize_1comp 6.095 0.082 8.198 parameterize_3comp2 5.219 0.037 6.634 convert_solve_x 5.123 0.024 5.816 parameterize_pbtk 4.446 0.000 6.795 solve_1comp 3.634 0.006 5.278 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [285s/360s] OK Running ‘1comp_test.R’ [34s/47s] Comparing ‘1comp_test.Rout’ to ‘1comp_test.Rout.save’ ... OK Running ‘3comp_test.R’ [24s/28s] Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK Running ‘3compss_test.R’ [11s/13s] Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK Running ‘adddata_test.R’ [8s/9s] Comparing ‘adddata_test.Rout’ to ‘adddata_test.Rout.save’ ... OK Running ‘caco2_test.R’ [22s/27s] Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK Running ‘cheminfo_test.R’ [8s/10s] Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK Running ‘fetal_pbtk_testing.R’ [16s/21s] Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK Running ‘ivive_test.R’ [28s/34s] Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK Running ‘montecarlo_tests.R’ [54s/75s] Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK Running ‘other_tests.R’ [24s/30s] Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK Running ‘pbtk_test.R’ [19s/22s] Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK Running ‘solve_gas_test.R’ [12s/14s] Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK Running ‘testthat.R’ [20s/22s] Running ‘unit_test.R’ [6s/7s] Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [163s/230s] OK * checking PDF version of manual ... [16s/24s] OK * checking HTML version of manual ... [12s/21s] OK * checking for non-standard things in the check directory ... OK * DONE Status: OK