Install log for 'hibayes'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘hibayes’ ...
** package ‘hibayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.3 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxLu2c5/R.INSTALL1dcc2a65888366/hibayes/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c Bayes.cpp -o Bayes.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c SBayesD.cpp -o SBayesD.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c SBayesS.cpp -o SBayesS.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c cg.cpp -o cg.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c cutwind.cpp -o cutwind.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c read_bed.cpp -o read_bed.o
read_bed.cpp:142:9: warning: variable 'n_bytes_read' set but not used [-Wunused-but-set-variable]
  142 |         size_t n_bytes_read = static_cast<size_t>(fread(buffer, 1, 3, fin));
      |                ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c rm.cpp -o rm.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c solver.cpp -o solver.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c stats.cpp -o stats.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD=1  -fpic  -g -O3 -Wall -pedantic  -c tXXmat.cpp -o tXXmat.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o hibayes.so Bayes.o RcppExports.o SBayesD.o SBayesS.o cg.o cutwind.o read_bed.o rm.o solver.o stats.o tXXmat.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxLu2c5/R.INSTALL1dcc2a65888366/hibayes/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxLu2c5/R.INSTALL1dcc2a65888366/hibayes/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxLu2c5/R.INSTALL1dcc2a65888366/hibayes/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-hibayes/00new/hibayes/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hibayes)