Install log for 'goldfish'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘goldfish’ ...
** package ‘goldfish’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++-19 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... clang++-19 -std=gnu++17 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether clang++-19 -std=gnu++17 accepts -g... (cached) yes
checking for macOS... not found as on Linux
checking for OpenMP... missing
configure: creating ./config.status
config.status: creating src/Makevars

 --------------------------------------------------
  Configuration for goldfish version 
  ================

    openMP: -DARMA_DONT_USE_OPENMP
    cxxflags: -g -O3 -Wall -pedantic
    libs:     

  --------------------------------------------------

** libs
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpR9l4rn/R.INSTALL3dd57f2f49bad4/goldfish/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c DyNAM_MM_default.cpp -o DyNAM_MM_default.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c DyNAM_choice_default.cpp -o DyNAM_choice_default.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c DyNAM_rate_default.cpp -o DyNAM_rate_default.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c DyNAM_rate_ordered_default.cpp -o DyNAM_rate_ordered_default.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c REM_default.cpp -o REM_default.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c REM_ordered_default.cpp -o REM_ordered_default.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c compute_coordination_selection.cpp -o compute_coordination_selection.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c compute_multinomial_selection.cpp -o compute_multinomial_selection.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c compute_poisson_selection.cpp -o compute_poisson_selection.o
compute_poisson_selection.cpp:42:9: warning: variable 'id_dep_event' set but not used [-Wunused-but-set-variable]
   42 |     int id_dep_event = 0;
      |         ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c convert_rdata_to_cdata.cpp -o convert_rdata_to_cdata.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c gather_progress.cpp -o gather_progress.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c gather_receiver_model.cpp -o gather_receiver_model.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c gather_sender_model.cpp -o gather_sender_model.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_DONT_USE_OPENMP -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c gather_sender_receiver_model.cpp -o gather_sender_receiver_model.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o goldfish.so DyNAM_MM_default.o DyNAM_choice_default.o DyNAM_rate_default.o DyNAM_rate_ordered_default.o REM_default.o REM_ordered_default.o RcppExports.o compute_coordination_selection.o compute_multinomial_selection.o compute_poisson_selection.o convert_rdata_to_cdata.o gather_progress.o gather_receiver_model.o gather_sender_model.o gather_sender_receiver_model.o -DARMA_DONT_USE_OPENMP -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9l4rn/R.INSTALL3dd57f2f49bad4/goldfish/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpR9l4rn/R.INSTALL3dd57f2f49bad4/goldfish/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpR9l4rn/R.INSTALL3dd57f2f49bad4/goldfish/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-goldfish/00new/goldfish/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (goldfish)