* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/gggenomes.Rcheck’
* using R Under development (unstable) (2024-07-14 r86899)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1+b1)
    Debian flang-new version 18.1.8 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘gggenomes/DESCRIPTION’ ... OK
* this is package ‘gggenomes’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘gggenomes’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/gggenomes-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the package can be unloaded cleanly ... [1s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [25s/32s] OK
* checking Rd files ... [1s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [152s/176s] OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
focus           14.630  0.275  16.584
add_tracks      12.002  0.831  16.187
gggenomes       12.149  0.070  14.475
read_alitv      10.109  0.198  13.391
geom_gene        9.787  0.059  10.250
pick             8.508  0.098   9.768
geom_link        8.301  0.062   9.565
flip             8.204  0.135   9.258
scale_x_bp       6.898  0.123   8.044
geom_bin_label   6.239  0.060   7.239
position_strand  6.268  0.012   7.021
geom_wiggle      6.131  0.027   6.462
shift            5.684  0.000   6.460
geom_seq         5.312  0.028   5.605
geom_seq_break   4.898  0.000   5.737
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/8s] OK
  Running ‘find_missing.R’ [2s/3s]
  Running ‘testthat.R’ [3s/4s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [67s/92s] OK
* checking PDF version of manual ... [10s/14s] OK
* checking HTML version of manual ... [5s/9s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK