* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ggdist.Rcheck’ * using R Under development (unstable) (2025-02-26 r87830) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘ggdist/DESCRIPTION’ ... OK * this is package ‘ggdist’ version ‘3.3.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ggdist’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/ggdist-00install.html' for details. * used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [1s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s/36s] OK * checking Rd files ... [4s/6s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: Pr_.Rd: after_stat, quasiquotation cut_cdf_qi.Rd: cdf geom_blur_dots.Rd: position_dodge, layer, geom_dotplot, geom_point, ggplot geom_dots.Rd: position_dodge, layer, geom_dotplot, geom_point, ggplot geom_dotsinterval.Rd: position_dodge, layer, scale_size_continuous, geom_dotplot, geom_point, dist_normal, dist_beta, aes, ggplot geom_interval.Rd: position_dodge, layer, scale_size_continuous, ggplot2, ggplot geom_lineribbon.Rd: geom_line, geom_ribbon, layer, ggplot geom_pointinterval.Rd: position_dodge, layer, scale_size_continuous, ggplot2, ggplot geom_slab.Rd: position_dodge, layer, ggplot geom_slabinterval.Rd: position_dodge, layer, scale_size_continuous, ggplot geom_spike.Rd: position_dodge, layer, ggplot geom_swarm.Rd: position_dodge, layer, geom_dotplot, geom_point, ggplot geom_weave.Rd: position_dodge, layer, geom_dotplot, geom_point, ggplot ggdist-ggproto.Rd: ggproto guide_rampbar.Rd: guide_colourbar parse_dist.Rd: dist_truncated point_interval.Rd: stat_summary scale_colour_ramp.Rd: discrete_scale, continuous_scale, guides, ggplot scale_side_mirrored.Rd: ggplot scale_thickness.Rd: ggplot smooth_discrete.Rd: resolution stat_ccdfinterval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_cdfinterval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_dots.Rd: position_dodge, layer, geom_dotplot, geom_point, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_dotsinterval.Rd: position_dodge, layer, scale_size_continuous, geom_dotplot, geom_point, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_eye.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_gradientinterval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_halfeye.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_histinterval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_interval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_lineribbon.Rd: position_dodge, layer, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_mcse_dots.Rd: position_dodge, layer, geom_dotplot, geom_point, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_pointinterval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_ribbon.Rd: position_dodge, layer, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_slab.Rd: position_dodge, layer, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_slabinterval.Rd: position_dodge, layer, scale_size_continuous, dist_normal, dist_beta, aes, ggplot, after_stat, stage stat_spike.Rd: position_dodge, layer, after_stat, dist_normal, dist_beta, aes, ggplot, stage sub-geometry-scales.Rd: scale_color_discrete, scale_alpha_continuous, scale_color_continuous, ggplot subguide_axis.Rd: guide_axis Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [53s/79s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [74s/107s] OK Running ‘testthat.R’ [73s/106s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [229s/299s] OK * checking PDF version of manual ... [21s/24s] OK * checking HTML version of manual ... [18s/22s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 NOTE