* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/generalCorr.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘generalCorr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘generalCorr’ version ‘1.2.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘generalCorr’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/generalCorr-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/40s] OK
* checking Rd files ... [2s/4s] NOTE
checkRd: (-1) EuroCrime.Rd:18: Lost braces; missing escapes or markup?
    18 | \item\code{Country} {Name of the European country}
       |                     ^
checkRd: (-1) EuroCrime.Rd:19: Lost braces; missing escapes or markup?
    19 | \item\code{crim} {Per capita crime rate}
       |                  ^
checkRd: (-1) EuroCrime.Rd:20: Lost braces; missing escapes or markup?
    20 | \item\code{off} {Per capita deployment of police officers}
       |                 ^
checkRd: (-1) bootGcLC.Rd:26: Lost braces; missing escapes or markup?
    26 | out {is  n999 X 3 matrix for 3 outputs of GcauseX12 resampled}
       |     ^
checkRd: (-1) bootGcRsq.Rd:26: Lost braces; missing escapes or markup?
    26 | out {is  n999 X 3 matrix for 3 outputs of GcauseX12 resampled}
       |     ^
checkRd: (-1) bootPairs.Rd:18-22: Lost braces
    18 | out {When \code{mtx} has p columns, \code{out}
       |     ^
checkRd: (-1) bootPairs0.Rd:18-22: Lost braces
    18 | out {When \code{mtx} has p columns, \code{out}
       |     ^
checkRd: (-1) bootQuantile.Rd:20-28: Lost braces
    20 | CI {k quantiles evaluated at probs as a matrix with k rows 
       |    ^
checkRd: (-1) bootSign.Rd:17-25: Lost braces
    17 | sgn {When \code{mtx} has p columns, \code{sgn}
       |     ^
checkRd: (-1) bootSignPcent.Rd:17-25: Lost braces
    17 | sgn {When \code{mtx} has p columns, \code{sgn}
       |     ^
checkRd: (-1) bootSummary.Rd:16-21: Lost braces
    16 | summ {summary output from the (n999 by p-1) matrix
       |      ^
checkRd: (-1) bootSummary2.Rd:16-21: Lost braces
    16 | summ {a summary matrix (n999 by p-1) having usual parameters
       |      ^
checkRd: (-1) causeSum2Panel.Rd:94: Lost braces
    94 | fminmax=function(x){min(x)==max(x)}.
       |                    ^
checkRd: (-1) causeSum2Panel.Rd:106: Lost braces
   106 | We identify degeneracy using "fminmax=function(x){min(x)==max(x)}"
       |                                                  ^
checkRd: (-1) probSign.Rd:17-25: Lost braces
    17 | sgn {When \code{mtx} has p columns, \code{sgn}
       |     ^
checkRd: (-1) somePairs.Rd:39: Lost braces; missing escapes or markup?
    39 | {(typ=2)} 
       | ^
checkRd: (-1) somePairs.Rd:44: Lost braces; missing escapes or markup?
    44 | {(typ=3)} 
       | ^
checkRd: (-1) somePairs2.Rd:43: Lost braces; missing escapes or markup?
    43 | {(typ=2)} 
       | ^
checkRd: (-1) somePairs2.Rd:48: Lost braces; missing escapes or markup?
    48 | {(typ=3)} 
       | ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [43s/53s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [4s/5s] OK
* checking PDF version of manual ... [11s/14s] OK
* checking HTML version of manual ... [7s/12s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE