* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘genepop’ ...
** package ‘genepop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.4 (1)’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiNrhpZ/R.INSTALLd234354b69384/genepop/src'
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c CT_tests.cpp -o CT_tests.o
In file included from CT_tests.cpp:40:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
  115 |   std::vector<CPopulation *>::iterator p,pp; // CPopulation contient les popName()
      |                                          ^~
./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                       ^~
./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                          ^~
CT_tests.cpp:783:34: warning: unused variable 'p1' [-Wunused-variable]
  783 |   vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                  ^~
CT_tests.cpp:783:37: warning: unused variable 'p2' [-Wunused-variable]
  783 |   vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                     ^~
5 warnings generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c F_est.cpp -o F_est.o
F_est.cpp:2050:9: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation]
 2050 |         int npairs=0;
      |         ^
F_est.cpp:2032:5: note: previous statement is here
 2032 |     for (s1=0; s1<nb_sam_sel-1; s1++)
      |     ^
1 warning generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c GenepopS.cpp -o GenepopS.o
In file included from GenepopS.cpp:56:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
  115 |   std::vector<CPopulation *>::iterator p,pp; // CPopulation contient les popName()
      |                                          ^~
./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                       ^~
./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                          ^~
GenepopS.cpp:1491:16: warning: variable 'popit' set but not used [-Wunused-but-set-variable]
 1491 |         size_t nb_all,popit;
      |                       ^
4 warnings generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c HW_tests.cpp -o HW_tests.o
HW_tests.cpp:247:23: warning: variable 'necess_mark' set but not used [-Wunused-but-set-variable]
  247 | int possible_exact=0, necess_mark=0;
      |                       ^
HW_tests.cpp:1650:10: warning: variable 'kfi' set but not used [-Wunused-but-set-variable]
 1650 |   size_t kfi,allele, k;
      |          ^
2 warnings generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RGenepop.cpp -o RGenepop.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c bootstrap.cpp -o bootstrap.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c conversions.cpp -o conversions.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c genepop.cpp -o genepop.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c multimig.cpp -o multimig.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c proba.cpp -o proba.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c settings.cpp -o settings.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion  -c tools.cpp -o tools.o
clang++-19 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o genepop.so CT_tests.o F_est.o GenepopS.o HW_tests.o RGenepop.o RcppExports.o bootstrap.o conversions.o genepop.o multimig.o proba.o settings.o tools.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiNrhpZ/R.INSTALLd234354b69384/genepop/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiNrhpZ/R.INSTALLd234354b69384/genepop/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiNrhpZ/R.INSTALLd234354b69384/genepop/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-genepop/00new/genepop/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genepop)