* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/frailtyMMpen.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘frailtyMMpen/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘frailtyMMpen’ version ‘1.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘frailtyMMpen’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/frailtyMMpen-00install.html' for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/3s] OK
* checking whether startup messages can be suppressed ... [2s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/19s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{center}}{\figure{fig8.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:103: Lost braces
   103 | \if{latex}{\out{\begin{center}}{\figure{fig9.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:108: Lost braces
   108 | \if{latex}{\out{\begin{center}}{\figure{fig10.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:113: Lost braces
   113 | \if{latex}{\out{\begin{center}}{\figure{fig11.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:118: Lost braces
   118 | \if{latex}{\out{\begin{center}}{\figure{fig12.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:123: Lost braces
   123 | \if{latex}{\out{\begin{center}}{\figure{fig13.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:128: Lost braces
   128 | \if{latex}{\out{\begin{center}}{\figure{fig14.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:136: Lost braces; missing escapes or markup?
   136 | is fitted, please use {1,2...,K} to denote the event id from the input data. To run the recurrent event model, 
       |                       ^
checkRd: (-1) frailtyMM.Rd:50: Lost braces; missing escapes or markup?
    50 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [4s/6s] OK
* checking PDF version of manual ... [8s/11s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE