• using R Under development (unstable) (2024-11-20 r87352)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘equivalence/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘equivalence’ version ‘0.7.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘equivalence’ can be installed ... OK See the install log for details.
• used C compiler: ‘Debian clang version 19.1.3 (2)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
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• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
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• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) equivalence.xyplot.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:37-38: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:39-40: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:41-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:44-45: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:46-47: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:48-49: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:50-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:52-53: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:54-57: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:58-60: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:61-63: Lost braces in \itemize; meant \describe ? checkRd: (-1) equivalence.xyplot.Rd:64-65: Lost braces in \itemize; meant \describe ? checkRd: (-1) rtost.Rd:7: Lost braces; missing escapes or markup?      7 | This function computes the TOST and key TOST quantities for the two one-sided test for equivalence [Schuirmann (1981) and Westlake (1981)], using the robust t-test of Yuen [Yuen and Dixon (1973), Yuen (1974)] in place of the standard Welch t test (t.test {stats}). The yuen t test makes no assumption of normality. The function computes the robust TOST for a sample of paired differences or for two samples. The function performs almost as well as the Welch t test when the population distribution is normal and is more robust than the Welch t test in the face of non-normality (e.g., distributions that are long-tailed, heteroscedastic, or contaminated by outliers)[Yuen and Dixon (1973), Yuen (1974)].        | ^ checkRd: (-1) rtost.Rd:23: Lost braces; missing escapes or markup?     23 | \details{The rtost function is wrapped around the yuen {PairedData} t test, a robust variant of the t test using trimmed means and winsorized variances. It provides tosts for the same range of designs, accepts the same arguments, and handles missing values the same way as tost {equivalence}. For the tost, the user must set epsilon, which is the magnitude of region similarity. Warning: with tr > 0.25 type I error control might be poor.        | ^ checkRd: (-1) rtost.Rd:23: Lost braces; missing escapes or markup?     23 | \details{The rtost function is wrapped around the yuen {PairedData} t test, a robust variant of the t test using trimmed means and winsorized variances. It provides tosts for the same range of designs, accepts the same arguments, and handles missing values the same way as tost {equivalence}. For the tost, the user must set epsilon, which is the magnitude of region similarity. Warning: with tr > 0.25 type I error control might be poor.        | ^ checkRd: (-1) rtost.Rd:60: Lost braces; missing escapes or markup?     60 | \note{This test is the tost for equivalence (tost {equivalence}) wrapped around the robust, trimmed mean, winsorized variance yuen.t.test (yuen {PairedData}).}        | ^ checkRd: (-1) rtost.Rd:60: Lost braces; missing escapes or markup?     60 | \note{This test is the tost for equivalence (tost {equivalence}) wrapped around the robust, trimmed mean, winsorized variance yuen.t.test (yuen {PairedData}).}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   equiv.boot.Rd: boot   equivalence.xyplot.Rd: xyplot   rtost.Rd: yuen.t.test Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
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• checking contents of ‘data’ directory ... OK
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• checking examples ... [3s/4s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs