• using R Under development (unstable) (2024-12-18 r87448)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.5 (1)     Debian flang-new version 19.1.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘epidatr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘epidatr’ version ‘1.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘epidatr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/14s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [6s/10s] ERROR   Running ‘testthat.R’ [6s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(epidatr)   >   > test_check("epidatr")   [ FAIL 2 | WARN 1 | SKIP 2 | PASS 228 ]      ══ Skipped tests (2) ═══════════════════════════════════════════════════════════   • empty test (2): 'test-endpoints.R:1:1', 'test-utils.R:24:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-covidcast.R:2:3'): covidcast ───────────────────────────────────   <http_500/http_error/error/condition>   Error in `epidatr::covidcast_epidata()`: Internal Server Error (HTTP 500). Failed to fetch data from API : The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application..   Backtrace:       ▆    1. └─epidatr::covidcast_epidata() at test-covidcast.R:2:3    2. └─httr::stop_for_status(response, task = msg)   ── Error ('test-covidcast.R:33:3'): name completion ────────────────────────────   <http_500/http_error/error/condition>   Error in `epidatr::covidcast_epidata()`: Internal Server Error (HTTP 500). Failed to fetch data from API : The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application..   Backtrace:       ▆    1. └─epidatr::covidcast_epidata() at test-covidcast.R:33:3    2. └─httr::stop_for_status(response, task = msg)      [ FAIL 2 | WARN 1 | SKIP 2 | PASS 228 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/22s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘epidatr.Rmd’ using rmarkdown Quitting from lines 77-91 [unnamed-chunk-2] (epidatr.Rmd) Error: processing vignette 'epidatr.Rmd' failed with diagnostics: epidata error: `database error: (builtins.AttributeError) 'NoneType' object has no attribute 'cursor' [SQL: SELECT t.geo_value, t.signal, t.time_value, t.direction, t.issue, t.lag, t.missing_value, t.missing_stderr, t.missing_sample_size, t.value, t.stderr, t.sample_size FROM epimetric_latest_v t WHERE ((t.source = %s AND (t.signal = %s))) AND ((t.geo_type = %s AND (t.geo_value = %s))) AND ((t.time_type = %s AND (t.time_value BETWEEN %s AND %s))) ORDER BY t.signal ASC, t.time_value ASC, t.geo_value ASC, t.issue ASC LIMIT 3651] [parameters: [{'source_0t': 'fb-survey', 'source_0t_0': 'smoothed_cli', 'geo_type_0t': 'nation', 'geo_type_0t_0': 'us', 'time_type_0t': 'day', 'time_type_0t_0': 20210105, 'time_type_0t_0_2': 20210410}]]` --- failed re-building ‘epidatr.Rmd’ --- re-building ‘signal-discovery.Rmd’ using rmarkdown --- finished re-building ‘signal-discovery.Rmd’ --- re-building ‘versioned-data.Rmd’ using rmarkdown --- finished re-building ‘versioned-data.Rmd’ SUMMARY: processing the following file failed:   ‘epidatr.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs