* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘dynsurv’ ...
** package ‘dynsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.5 (1)’
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSuL3Dr/R.INSTALL26c2ba4e6da4fe/dynsurv/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I. -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c IntRegPar.cpp -o IntRegPar.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c arms.c -o arms.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I. -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c bayesCox.cpp -o bayesCox.o
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
./TimeIndepModel.h:65:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
65 | int err;
| ^
In file included from bayesCox.cpp:4:
In file included from ./TimeVaryingCoxModel.h:17:
./TimeVaryingModel.h:85:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
85 | int err;
| ^
./TimeVaryingModel.h:162:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
162 | int err;
| ^
In file included from bayesCox.cpp:5:
In file included from ./DynamicCoxModel.h:17:
./DynamicModel.h:355:11: warning: variable 'err' set but not used [-Wunused-but-set-variable]
355 | int err;
| ^
./DynamicModel.h:452:11: warning: variable 'err' set but not used [-Wunused-but-set-variable]
452 | int err;
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>, ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:48:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
48 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:15:
In file included from ./IntRegPrior.h:14:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/iostream:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ostream:40:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ios:44:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/ios_base.h:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/locale_classes.h:40:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/string:54:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/basic_string.h:39:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ext/alloc_traits.h:34:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:33:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:7: warning: destructor called on non-final 'ir::TimeIndepCoxPar' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
151 | __pointer->~_Tp();
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:163:11: note: in instantiation of function template specialization 'std::_Destroy<ir::TimeIndepCoxPar>' requested here
163 | std::_Destroy(std::__addressof(*__first));
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:196:2: note: in instantiation of function template specialization 'std::_Destroy_aux<false>::__destroy<ir::TimeIndepCoxPar *>' requested here
196 | __destroy(__first, __last);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:981:12: note: in instantiation of function template specialization 'std::_Destroy<ir::TimeIndepCoxPar *>' requested here
981 | std::_Destroy(__first, __last);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_vector.h:735:7: note: in instantiation of function template specialization 'std::_Destroy<ir::TimeIndepCoxPar *, ir::TimeIndepCoxPar>' requested here
735 | std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish,
| ^
./GibbsSampler.h:40:3: note: in instantiation of member function 'std::vector<ir::TimeIndepCoxPar>::~vector' requested here
40 | GibbsSampler(const boost::shared_ptr<M>& pm,
| ^
bayesCox.cpp:50:23: note: in instantiation of member function 'ir::GibbsSampler<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>::GibbsSampler' requested here
50 | GibbsSampler<M> gs(pm, p_iter[0]);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:19: note: qualify call to silence this warning
151 | __pointer->~_Tp();
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>, ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:76:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
76 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:104:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
104 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:15:
In file included from ./IntRegPrior.h:14:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/iostream:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ostream:40:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ios:44:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/ios_base.h:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/locale_classes.h:40:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/string:54:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/basic_string.h:39:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ext/alloc_traits.h:34:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:33:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:7: warning: destructor called on non-final 'ir::TimeVaryingCoxPar' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
151 | __pointer->~_Tp();
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:163:11: note: in instantiation of function template specialization 'std::_Destroy<ir::TimeVaryingCoxPar>' requested here
163 | std::_Destroy(std::__addressof(*__first));
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:196:2: note: in instantiation of function template specialization 'std::_Destroy_aux<false>::__destroy<ir::TimeVaryingCoxPar *>' requested here
196 | __destroy(__first, __last);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:981:12: note: in instantiation of function template specialization 'std::_Destroy<ir::TimeVaryingCoxPar *>' requested here
981 | std::_Destroy(__first, __last);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_vector.h:735:7: note: in instantiation of function template specialization 'std::_Destroy<ir::TimeVaryingCoxPar *, ir::TimeVaryingCoxPar>' requested here
735 | std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish,
| ^
./GibbsSampler.h:40:3: note: in instantiation of member function 'std::vector<ir::TimeVaryingCoxPar>::~vector' requested here
40 | GibbsSampler(const boost::shared_ptr<M>& pm,
| ^
bayesCox.cpp:107:23: note: in instantiation of member function 'ir::GibbsSampler<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::GibbsSampler' requested here
107 | GibbsSampler<M> gs(pm, p_iter[0]);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:19: note: qualify call to silence this warning
151 | __pointer->~_Tp();
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:133:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
133 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:164:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
164 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:193:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
193 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:224:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
224 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:15:
In file included from ./IntRegPrior.h:14:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/iostream:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ostream:40:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ios:44:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/ios_base.h:41:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/locale_classes.h:40:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/string:54:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/basic_string.h:39:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/ext/alloc_traits.h:34:
In file included from /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:33:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:7: warning: destructor called on non-final 'ir::DynamicCoxPar' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
151 | __pointer->~_Tp();
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:163:11: note: in instantiation of function template specialization 'std::_Destroy<ir::DynamicCoxPar>' requested here
163 | std::_Destroy(std::__addressof(*__first));
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:196:2: note: in instantiation of function template specialization 'std::_Destroy_aux<false>::__destroy<ir::DynamicCoxPar *>' requested here
196 | __destroy(__first, __last);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/alloc_traits.h:981:12: note: in instantiation of function template specialization 'std::_Destroy<ir::DynamicCoxPar *>' requested here
981 | std::_Destroy(__first, __last);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_vector.h:735:7: note: in instantiation of function template specialization 'std::_Destroy<ir::DynamicCoxPar *, ir::DynamicCoxPar>' requested here
735 | std::_Destroy(this->_M_impl._M_start, this->_M_impl._M_finish,
| ^
./GibbsSampler.h:40:3: note: in instantiation of member function 'std::vector<ir::DynamicCoxPar>::~vector' requested here
40 | GibbsSampler(const boost::shared_ptr<M>& pm,
| ^
bayesCox.cpp:228:23: note: in instantiation of member function 'ir::GibbsSampler<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::GibbsSampler' requested here
228 | GibbsSampler<M> gs(pm, p_iter[0]);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_construct.h:151:19: note: qualify call to silence this warning
151 | __pointer->~_Tp();
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:257:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
257 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>, ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:292:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
292 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>, ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:324:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
324 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:359:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
359 | boost::shared_ptr<M> pm(new M(pd));
| ^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
44 | delete x;
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
150 | boost::checked_delete( p );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
205 | boost::detail::shared_count( p ).swap( pn );
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
283 | boost::detail::sp_pointer_construct( this, p, pn );
| ^
bayesCox.cpp:392:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
392 | boost::shared_ptr<M> pm(new M(pd));
| ^
20 warnings generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dynsurv_init.c -o dynsurv_init.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o dynsurv.so IntRegPar.o arms.o bayesCox.o dynsurv_init.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSuL3Dr/R.INSTALL26c2ba4e6da4fe/dynsurv/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSuL3Dr/R.INSTALL26c2ba4e6da4fe/dynsurv/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSuL3Dr/R.INSTALL26c2ba4e6da4fe/dynsurv/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-dynsurv/00new/dynsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dynsurv)