• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘downscale/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘downscale’ version ‘5.0.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘downscale’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/10s] OK
• checking whether the package can be loaded with stated dependencies ... [8s/11s] OK
• checking whether the package can be unloaded cleanly ... [8s/9s] OK
• checking whether the namespace can be loaded with stated dependencies ... [9s/11s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/9s] OK
• checking loading without being on the library search path ... [9s/11s] OK
• checking whether startup messages can be suppressed ... [8s/10s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [38s/50s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) downscale.Rd:9: Lost braces; missing escapes or markup?      9 | \item{occupancies}{Either a data frame containing two columns or an object of class \code{"upgrain"} from the \code{\link{upgrain}} function. If using a data frame the first column must be the grain sizes (cell area in squared units e.g. km^{2}). The second column is the proportion of occupancies at each grain size.}        | ^ checkRd: (-1) ensemble.downscale.Rd:13: Lost braces; missing escapes or markup?     13 | \item{new.areas}{vector of grain sizes (in squared units e.g. km^{2}) for which area of occupancy will be predicted.}        | ^ checkRd: (-1) hui.downscale.Rd:13: Lost braces; missing escapes or markup?     13 | \item{new.areas}{vector of grain sizes as cell area (in same units as cell.width but squared e.g. km^{2}) at fine scales for model prediction.}        | ^ checkRd: (-1) predict.downscale.Rd:10: Lost braces; missing escapes or markup?     10 | \item{new.areas}{vector of grain sizes (in squared units e.g. km^{2}) for which area of occupancy will be predicted.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   downscale.Rd: mpfr Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [25s/33s] OK Examples with CPU (user + system) or elapsed time > 5s                    user system elapsed upgrain.threshold 4.992 0 6.254
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [136s/162s] OK
• checking PDF version of manual ... [8s/10s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs