- using R Under development (unstable) (2024-12-25 r87466)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.6 (1)
Debian flang-new version 19.1.6 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘discSurv/DESCRIPTION’ ... OK
- this is package ‘discSurv’ version ‘2.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘discSurv’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [24s/30s] OK
- checking Rd files ... [4s/6s] NOTE
checkRd: (-1) cIndex.Rd:32: Lost braces; missing escapes or markup?
32 | [a_{q-1}, a_q) are available.
| ^
checkRd: (-1) cIndexCompRisks.Rd:31: Lost braces; missing escapes or markup?
31 | [a_{q-1}, a_q) are available.
| ^
checkRd: (-1) dataCensoring.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) dataLong.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) dataLongCompRisksTimeDep.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) dataLongMultiSpell.Rd:123: Escaped LaTeX specials: \&
checkRd: (-1) dataLongTimeDep.Rd:96: Escaped LaTeX specials: \&
checkRd: (-1) estMargProb.Rd:23: Lost braces; missing escapes or markup?
23 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
| ^
checkRd: (-1) estMargProbCompRisks.Rd:24: Lost braces; missing escapes or markup?
24 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
| ^
checkRd: (-1) estSurv.Rd:23: Lost braces; missing escapes or markup?
23 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
| ^
checkRd: (-1) estSurvCompRisks.Rd:24: Lost braces; missing escapes or markup?
24 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
| ^
checkRd: (-1) lifeTable.Rd:21: Lost braces; missing escapes or markup?
21 | [a_0, a_1), [a_1, a_2), ..., [a_{q-1}, a_q) ("character vector")}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [28s/38s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
minNodePruningCompRisks 3.462 0.115 5.34
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [17s/23s] OK
Running ‘UnitTestsDiscSurvDataTransform.R’ [4s/6s]
Running ‘UnitTestsDiscSurvEstimation.R’ [3s/4s]
Running ‘UnitTestsDiscSurvEvalShort.R’ [6s/8s]
Running ‘UnitTestsDiscSurvLifeTable.R’ [3s/4s]
- checking PDF version of manual ... [8s/10s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE