- using R Under development (unstable) (2024-11-13 r87330)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.3 (1)
Debian flang-new version 19.1.3 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘data.table/DESCRIPTION’ ... OK
- this is package ‘data.table’ version ‘1.16.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘data.table’ can be installed ... OK
See the install log for details.
- used C compiler: ‘Debian clang version 19.1.3 (1)’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking whether startup messages can be suppressed ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [32s/43s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... NOTE
File ‘data.table/libs/data_table.so’:
Found non-API calls to R: ‘LEVELS’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
‘SET_TRUELENGTH’, ‘STRING_PTR’, ‘TRUELENGTH’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/6s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [82s/108s] ERROR
Running ‘S4.R’ [1s/1s]
Running ‘autoprint.R’ [0s/1s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
Running ‘froll.R’ [23s/32s]
Running ‘knitr.R’ [1s/1s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [54s/69s]
Running ‘nafill.R’ [1s/1s]
Running ‘other.R’ [0s/1s]
Running ‘programming.R’ [1s/2s]
Running ‘types.R’ [0s/1s]
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
>
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
getDTthreads(verbose=TRUE):
This installation of data.table has not been compiled with OpenMP support.
omp_get_num_procs() 1
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
R_DATATABLE_THROTTLE unset (default 1024)
omp_get_thread_limit() 1
omp_get_max_threads() 1
OMP_THREAD_LIMIT 3
OMP_NUM_THREADS 3
RestoreAfterFork true
data.table is using 1 threads with throttle==1024. See ?setDTthreads.
test.data.table() running: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2
Error in bmerge(i, x, leftcols, rightcols, roll, rollends, nomatch, mult, :
typeof x.START_DATE (integer) != typeof i.DATE (double)
Thu Nov 14 21:45:41 2024 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/Vienna', Sys.getlocale()=='LC_CTYPE=C.UTF-8;LC_NUMERIC=C;LC_TIME=C.UTF-8;LC_COLLATE=C;LC_MONETARY=C.UTF-8;LC_MESSAGES=C.UTF-8;LC_PAPER=C.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=C.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='This installation of data.table has not been compiled with OpenMP support.; omp_get_num_procs()==1; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==1; omp_get_max_threads()==1; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 1 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/home/hornik/tmp/scratch/RtmpIuWqVG/RLIBS_9f81b3bb5fd22','/home/hornik/tmp/R.check/r-devel-clang/Work/build/library', zlibVersion()==1.3.1 ZLIB_VERSION==1.3.1
Error in test.data.table() :
Failed in 00:01:08 elapsed (52.6s cpu) after test 1847.3 before the next test() call in /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2
Calls: test.data.table -> stopf -> raise_condition -> signal
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [39s/57s] OK
- checking PDF version of manual ... [10s/13s] OK
- checking HTML version of manual ... [6s/10s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE