• using R Under development (unstable) (2024-12-18 r87448)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.5 (1)     Debian flang-new version 19.1.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘covidcast/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘covidcast’ version ‘0.5.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘covidcast’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [19s/25s] OK   Running ‘testthat.R’ [18s/24s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [68s/106s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘correlation-utils.Rmd’ using rmarkdown --- finished re-building ‘correlation-utils.Rmd’ --- re-building ‘covidcast.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/covidcast_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15201 bytes Input file size = 15291 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11811   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11811 Output IDAT size = 11811 bytes (3390 bytes decrease) Output file size = 11889 bytes (3402 bytes = 22.25% decrease) --- finished re-building ‘covidcast.Rmd’ --- re-building ‘external-data.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/external-data_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20618 bytes Input file size = 20720 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17871   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17871 Output IDAT size = 17871 bytes (2747 bytes decrease) Output file size = 17949 bytes (2771 bytes = 13.37% decrease) Quitting from lines 94-100 [unnamed-chunk-4] (external-data.Rmd) Error: processing vignette 'external-data.Rmd' failed with diagnostics: Internal Server Error (HTTP 500). Failed to fetch data from API anonymously. --- failed re-building ‘external-data.Rmd’ --- re-building ‘multi-signals.Rmd’ using rmarkdown --- finished re-building ‘multi-signals.Rmd’ --- re-building ‘plotting-signals.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 101803 bytes Input file size = 102025 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92526   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92526 Output IDAT size = 92526 bytes (9277 bytes decrease) Output file size = 92604 bytes (9421 bytes = 9.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-4-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35990 bytes Input file size = 36116 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26683   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26683 Output IDAT size = 26683 bytes (9307 bytes decrease) Output file size = 26761 bytes (9355 bytes = 25.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-5-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57061 bytes Input file size = 57211 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43946   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43946 Output IDAT size = 43946 bytes (13115 bytes decrease) Output file size = 44024 bytes (13187 bytes = 23.05% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-6-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48874 bytes Input file size = 49012 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35412   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35412 Output IDAT size = 35412 bytes (13462 bytes decrease) Output file size = 35490 bytes (13522 bytes = 27.59% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-7-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107047 bytes Input file size = 107281 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82404   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82404 Output IDAT size = 82404 bytes (24643 bytes decrease) Output file size = 82482 bytes (24799 bytes = 23.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-8-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 97540 bytes Input file size = 97750 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72294   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72294 Output IDAT size = 72294 bytes (25246 bytes decrease) Output file size = 72372 bytes (25378 bytes = 25.96% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-10-1.png 768x384 pixels, 8 bits/pixel, 254 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 18724 bytes Input file size = 19600 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17221   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17221 Output IDAT size = 17221 bytes (1503 bytes decrease) Output file size = 17299 bytes (2301 bytes = 11.74% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-12-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34166 bytes Input file size = 34292 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28269   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28269 Output IDAT size = 28269 bytes (5897 bytes decrease) Output file size = 28347 bytes (5945 bytes = 17.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-12-2.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31367 bytes Input file size = 31481 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26023   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26023 Output IDAT size = 26023 bytes (5344 bytes decrease) Output file size = 26101 bytes (5380 bytes = 17.09% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/covidcast.Rcheck/vign_test/covidcast/vignettes/plotting-signals_files/figure-html/unnamed-chunk-13-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35116 bytes Input file size = 35242 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28964   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28964 Output IDAT size = 28964 bytes (6152 bytes decrease) Output file size = 29042 bytes (6200 bytes = 17.59% decrease) --- finished re-building ‘plotting-signals.Rmd’ SUMMARY: processing the following file failed:   ‘external-data.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR