* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/cg.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘cg/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cg’ version ‘1.0-3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘cg’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/cg-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/6s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
* checking whether the package can be unloaded cleanly ... [4s/5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/6s] OK
* checking loading without being on the library search path ... [4s/6s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [53s/71s] OK
* checking Rd files ... [2s/2s] NOTE
checkRd: (-1) comparisonsTable.cgOneFactorFit.Rd:47: Lost braces
    47 |         call (see {\dots } section below.)
       |                   ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  anorexiaFT.Rd: anorexia
  boxplot.cgOneFactorData.Rd: survfit
  comparisonsGraph.cgOneFactorComparisonsTable.Rd: panel.text
  comparisonsTable.cgOneFactorFit.Rd: rlm
  comparisonsTable.cgPairedDifferenceFit.Rd: rlm
  comparisonsgraph.Rd: panel.text
  descriptiveTable.cgOneFactorData.Rd: survfit
  downweightedTable.Rd: rlm
  downweightedTable.cgOneFactorFit.Rd: rlm
  downweightedTable.cgPairedDifferenceFit.Rd: rlm
  fit.cgOneFactorData.Rd: rlm, survreg, gls
  fit.cgPairedDifferenceData.Rd: rlm
  kmGraph.Rd: label
  kmGraph.cgOneFactorData.Rd: label
  prepareCGOneFactorData.Rd: Surv, survreg, logtrans
  print.cgOneFactorComparisonsTable.Rd: rlm
  print.cgOneFactorFit.Rd: rlm
  print.cgOneFactorGlobalTest.Rd: rlm
  print.cgOneFactorGrpSummaryTable.Rd: rlm
  print.cgOneFactorSampleSizeTable.Rd: rlm
  print.cgPairedDifferenceComparisonsTable.Rd: rlm
  print.cgPairedDifferenceFit.Rd: rlm
  summary.cgOneFactorFit.Rd: rlm
  summary.cgPairedDifferenceFit.Rd: rlm
  varianceGraph.cgOneFactorFit.Rd: vgam
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [23s/30s] OK
* checking PDF version of manual ... [16s/20s] OK
* checking HTML version of manual ... [8s/13s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 2 NOTEs