Install log for 'bigtabulate'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘bigtabulate’ ...
** package ‘bigtabulate’ successfully unpacked and MD5 sums checked
** using staged installation
  checking for Sun Studio compiler...
no
  checking for OS...
Linux
** libs
using C compiler: ‘Debian clang version 19.1.5 (1)’
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYfAULz/R.INSTALL380eb379f8bc22/bigtabulate/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DLINUX -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c bigtabulate.cpp -o bigtabulate.o
In file included from bigtabulate.cpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper<double>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   44 |     delete x;
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<BreakMapper<double>>' requested here
  150 |             boost::checked_delete( p );
      |                    ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<BreakMapper<double>>' requested here
  205 |     boost::detail::shared_count( p ).swap( pn );
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<double>, BreakMapper<double>>' requested here
  283 |         boost::detail::sp_pointer_construct( this, p, pn );
      |                        ^
bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<double>>::shared_ptr<BreakMapper<double>>' requested here
  438 |       mappers.push_back( MapperPtr(
      |                          ^
bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY<double, MatrixAccessor<double>>' requested here
  772 |   return TAPPLY<double>( MatrixAccessor<double>( REAL(numericMatrix),
      |          ^
In file included from bigtabulate.cpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper<double>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   44 |     delete x;
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<IndexMapper<double>>' requested here
  150 |             boost::checked_delete( p );
      |                    ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<IndexMapper<double>>' requested here
  205 |     boost::detail::shared_count( p ).swap( pn );
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<double>, IndexMapper<double>>' requested here
  283 |         boost::detail::sp_pointer_construct( this, p, pn );
      |                        ^
bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<double>>::shared_ptr<IndexMapper<double>>' requested here
  445 |       mappers.push_back( MapperPtr( 
      |                          ^
bigtabulate.cpp:772:10: note: in instantiation of function template specialization 'TAPPLY<double, MatrixAccessor<double>>' requested here
  772 |   return TAPPLY<double>( MatrixAccessor<double>( REAL(numericMatrix),
      |          ^
In file included from bigtabulate.cpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'BreakMapper<int>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   44 |     delete x;
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<BreakMapper<int>>' requested here
  150 |             boost::checked_delete( p );
      |                    ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<BreakMapper<int>>' requested here
  205 |     boost::detail::shared_count( p ).swap( pn );
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<int>, BreakMapper<int>>' requested here
  283 |         boost::detail::sp_pointer_construct( this, p, pn );
      |                        ^
bigtabulate.cpp:438:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<int>>::shared_ptr<BreakMapper<int>>' requested here
  438 |       mappers.push_back( MapperPtr(
      |                          ^
bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY<int, MatrixAccessor<int>>' requested here
  782 |   return TAPPLY<int>( MatrixAccessor<int>( INTEGER(numericMatrix),
      |          ^
In file included from bigtabulate.cpp:7:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:23:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/core/checked_delete.hpp:44:5: warning: delete called on non-final 'IndexMapper<int>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   44 |     delete x;
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:150:20: note: in instantiation of function template specialization 'boost::checked_delete<IndexMapper<int>>' requested here
  150 |             boost::checked_delete( p );
      |                    ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:205:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<IndexMapper<int>>' requested here
  205 |     boost::detail::shared_count( p ).swap( pn );
      |     ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:283:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<Mapper<int>, IndexMapper<int>>' requested here
  283 |         boost::detail::sp_pointer_construct( this, p, pn );
      |                        ^
bigtabulate.cpp:445:26: note: in instantiation of function template specialization 'boost::shared_ptr<Mapper<int>>::shared_ptr<IndexMapper<int>>' requested here
  445 |       mappers.push_back( MapperPtr( 
      |                          ^
bigtabulate.cpp:782:10: note: in instantiation of function template specialization 'TAPPLY<int, MatrixAccessor<int>>' requested here
  782 |   return TAPPLY<int>( MatrixAccessor<int>( INTEGER(numericMatrix),
      |          ^
4 warnings generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -DLINUX -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/bigmemory/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c bigtabulate_init.c -o bigtabulate_init.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o bigtabulate.so bigtabulate.o bigtabulate_init.o -lrt -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYfAULz/R.INSTALL380eb379f8bc22/bigtabulate/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYfAULz/R.INSTALL380eb379f8bc22/bigtabulate/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYfAULz/R.INSTALL380eb379f8bc22/bigtabulate/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-bigtabulate/00new/bigtabulate/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigtabulate)