• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘betapart/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘betapart’ version ‘1.6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘betapart’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/21s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) beta.pair.Rd:46: Lost braces     46 | \code{\link{beta.pair.abund}}, code{\link{beta.multi}}, \code{\link{beta.sample}}, \code{\link{betapart.core}}, \code{\link{beta.temp}}        | ^ checkRd: (-1) betapart-package.Rd:36: Lost braces; missing escapes or markup?     36 | Andres Baselga, David Orme, Sebastien Villéger, Julien {De Bortoli}, Fabien Leprieur, Maxime Logez, Sara Martínez-Santalla, Ramiro Martín-Devasa, Carola Gómez-Rodríguez, and Rosa M. Crujeiras        | ^ checkRd: (-1) decay.model.Rd:22: Lost braces     22 | \item{y}{ code{dist} object, either containing similarities or dissimilarities between pairs of assemblages.}        | ^ checkRd: (-1) decay.model.Rd:23: Lost braces     23 | \item{x}{ code{dist} object, containing distances (spatial or other) between pairs of assemblages.}        | ^ checkRd: (-1) decay.model.Rd:26: Lost braces     26 | \item{y.type}{ polarity of the code{dist} object (i.e. 1 means total similarity or total dissimilarity),        | ^ checkRd: (-1) decay.model.Rd:35: Lost braces     35 | \item{data.y}{ original y data, code{dist} object, either containing similarities or dissimilarities between pairs of assemblages.}        | ^ checkRd: (-1) decay.model.Rd:36: Lost braces     36 | \item{data.x}{ original x data, code{dist} object, containing distances (spatial or other) between pairs of assemblages.}        | ^ checkRd: (-1) functional.betapart.core.pairwise.Rd:63-67: Lost braces in \itemize; meant \describe ? checkRd: (-1) functional.betapart.core.pairwise.Rd:68-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) functional.betapart.core.pairwise.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) functional.betapart.core.pairwise.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   functional.betapart.core.Rd: convhulln   functional.betapart.core.pairwise.Rd: convhulln   inter_geom.Rd: intersectn   qhull.opt.Rd: convhulln Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [13s/22s] OK Examples with CPU (user + system) or elapsed time > 5s                           user system elapsed zdep 4.413 0.004 5.083 functional.betapart.core 0.239 0.018 5.073
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs