• using R Under development (unstable) (2024-12-21 r87453)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.5 (1)     Debian flang-new version 19.1.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘bcfrailphdv/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘bcfrailphdv’ version ‘0.1.1’
• package encoding: UTF-8
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• checking whether package ‘bcfrailphdv’ can be installed ... OK See the install log for details.
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• checking R code for possible problems ... [56s/75s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) bcfraildv.Rd:35: Lost braces; missing escapes or markup?     35 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}        | ^ checkRd: (-1) bcfraildv.Rd:36: Lost braces; missing escapes or markup?     36 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}        | ^ checkRd: (-1) bcfraildv.Rd:37: Lost braces; missing escapes or markup?     37 | \item \code{stderr}-{A vector containing the Standard error of the Estimated parameters both covariate coefficients and frailty parameters.}        | ^ checkRd: (-1) bcfraildv.Rd:42: Lost braces; missing escapes or markup?     42 | \item \code{X}-{Matrix of observed covariates.}        | ^ checkRd: (-1) bcfraildv.Rd:43: Lost braces; missing escapes or markup?     43 | \item \code{time}-{the observed survival time.}        | ^ checkRd: (-1) bcfraildv.Rd:44: Lost braces; missing escapes or markup?     44 | \item \code{censor}-{censoring indicator.}        | ^ checkRd: (-1) bcfraildv.Rd:45: Lost braces; missing escapes or markup?     45 | \item \code{resid}-{the martingale residuals.}        | ^ checkRd: (-1) bcfraildv.Rd:46: Lost braces; missing escapes or markup?     46 | \item \code{lin.prid}-{the vector of linear predictors.}        | ^ checkRd: (-1) bcfraildv.Rd:47: Lost braces; missing escapes or markup?     47 | \item \code{frail}-{estimated Frailty values.}        | ^ checkRd: (-1) bcfraildv.Rd:48: Lost braces; missing escapes or markup?     48 | \item \code{iteration}-{Number of outer iterations.}        | ^ checkRd: (-1) bcfraildv.Rd:49: Lost braces; missing escapes or markup?     49 | \item \code{e.time}-{the vector of unique event times.}        | ^ checkRd: (-1) bcfraildv.Rd:50: Lost braces; missing escapes or markup?     50 | \item \code{n.event}- {the number of events at each of the unique event times.}        | ^ checkRd: (-1) bcfraildv.Rd:51: Lost braces; missing escapes or markup?     51 | \item \code{convergence}-{an indicator, 0 if converge and 1 otherwise.}        | ^ checkRd: (-1) bcfrailpar.Rd:41: Lost braces; missing escapes or markup?     41 | \item \code{coefficients} - {A vector of estimated Covariate coefficients.}        | ^ checkRd: (-1) bcfrailpar.Rd:42: Lost braces; missing escapes or markup?     42 | \item \code{frailparest} - {A vector of estimated Frailty parameters i.e. frailty variance and correlation.}        | ^ checkRd: (-1) bcfrailpar.Rd:43: Lost braces; missing escapes or markup?     43 | \item \code{basehazpar} - {A vector of estimated baseline hazard parameters i.e. scale and shape.}        | ^ checkRd: (-1) bcfrailpar.Rd:44: Lost braces; missing escapes or markup?     44 | \item \code{stderr}-{A vector containing the Standard errors of the Estimated parameters with the order of frailty parameters,baseline hazard parameters and covariate coefficients.}        | ^ checkRd: (-1) bcfrailpar.Rd:45: Lost braces; missing escapes or markup?     45 | \item \code{vcov}- {Variance Covariance matrix of the Estimated parameters.}        | ^ checkRd: (-1) bcfrailpar.Rd:46: Lost braces; missing escapes or markup?     46 | \item \code{loglik}-{Log likelihood of the model.}        | ^ checkRd: (-1) bcfrailpar.Rd:47: Lost braces; missing escapes or markup?     47 | \item \code{AIC}-{AIC of the model.}        | ^ checkRd: (-1) bcfrailpar.Rd:48: Lost braces; missing escapes or markup?     48 | \item \code{BIC}-{BIC of the model.}        | ^ checkRd: (-1) bcfrailpar.Rd:49: Lost braces     49 | \item \code{iterations}-{Number of outer iterations.See\link{constrOptim} for further.}        | ^ checkRd: (-1) bcfrailpar.Rd:50: Lost braces     50 | \item \code{convergence}-{An indicator of convergence. See\link{constrOptim} for further.}        | ^ checkRd: (-1) simbcfraildv.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfraildv.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfraildv.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfraildv.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simbcfraildv.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   bcfraildv.Rd: bcfrailph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
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• checking for unstated dependencies in examples ... OK
• checking examples ... [15s/22s] OK Examples with CPU (user + system) or elapsed time > 5s                    user system elapsed bcfraildv 3.952 0.094 5.163 print.bcfraildv 3.745 0.055 5.553 summary.bcfraildv 3.683 0.062 5.888
• checking PDF version of manual ... [5s/8s] OK
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• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs