- using R Under development (unstable) (2024-06-26 r86840)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 18.1.8 (1)
Debian flang-new version 18.1.8 (1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘algaeClassify/DESCRIPTION’ ... OK
- this is package ‘algaeClassify’ version ‘2.0.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘algaeClassify’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
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- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/12s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [4s/7s] ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genus_search_itis
> ### Title: Wrapper function for several functions in ritis:: Searches ITIS
> ### database for matches to a genus name
> ### Aliases: genus_search_itis
>
> ### ** Examples
>
> genus='Anabaena'
> genus_search_itis(genus,higher=FALSE)
Error:
! The `x` argument of `as_tibble()` can't be missing as of tibble 3.0.0.
Backtrace:
▆
1. └─algaeClassify::genus_search_itis(genus, higher = FALSE)
2. └─ritis::accepted_names(tsn = tsn)
3. └─ritis:::parse_raw(out)
4. ├─tibble::as_tibble()
5. └─tibble:::as_tibble.NULL()
6. └─lifecycle::deprecate_stop("3.0.0", "as_tibble(x = 'can\\'t be missing')")
7. └─lifecycle:::deprecate_stop0(msg)
8. └─rlang::cnd_signal(...)
Execution halted
- checking PDF version of manual ... [8s/11s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR