* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/TDApplied.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘TDApplied/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TDApplied’ version ‘3.0.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TDApplied’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/TDApplied-00install.html' for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/21s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/132s] OK
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
predict_diagram_ksvm             1.699  0.010  15.984
permutation_model_inference      0.812  0.183  23.853
bootstrap_persistence_thresholds 0.859  0.040   6.287
diagram_kkmeans                  0.314  0.008   9.204
permutation_test                 0.203  0.001   6.472
diagram_kpca                     0.173  0.009   5.536
diagram_ksvm                     0.177  0.004   6.604
predict_diagram_kpca             0.145  0.014   7.906
predict_diagram_kkmeans          0.133  0.008  14.611
distance_matrix                  0.117  0.004   7.142
independence_test                0.095  0.005   7.497
gram_matrix                      0.086  0.000   6.792
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [11s/117s] OK
  Running ‘testthat.R’ [10s/116s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [64s/287s] OK
* checking PDF version of manual ... [6s/7s] OK
* checking HTML version of manual ... [2s/3s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK