• using R Under development (unstable) (2025-02-26 r87830)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (1+b1)     Debian flang-new version 19.1.7 (1+b1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘TDApplied/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘TDApplied’ version ‘3.0.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘TDApplied’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/21s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/132s] OK Examples with CPU (user + system) or elapsed time > 5s                                   user system elapsed predict_diagram_ksvm 1.699 0.010 15.984 permutation_model_inference 0.812 0.183 23.853 bootstrap_persistence_thresholds 0.859 0.040 6.287 diagram_kkmeans 0.314 0.008 9.204 permutation_test 0.203 0.001 6.472 diagram_kpca 0.173 0.009 5.536 diagram_ksvm 0.177 0.004 6.604 predict_diagram_kpca 0.145 0.014 7.906 predict_diagram_kkmeans 0.133 0.008 14.611 distance_matrix 0.117 0.004 7.142 independence_test 0.095 0.005 7.497 gram_matrix 0.086 0.000 6.792
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/117s] OK   Running ‘testthat.R’ [10s/116s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [64s/287s] OK
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK