* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘SimBIID’ ...
** package ‘SimBIID’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpkhxvzx/R.INSTALL3d50c44f7ecd0/SimBIID/src'
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c adaptUpdate.cpp -o adaptUpdate.o
In file included from adaptUpdate.cpp:1:
In file included from ./functions.h:9:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   29 | #define R_NO_REMAP
      |         ^
<command line>:3:9: note: previous definition is here
    3 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c bootstrapParticleFilter.cpp -o bootstrapParticleFilter.o
In file included from bootstrapParticleFilter.cpp:1:
In file included from ./functions.h:9:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   29 | #define R_NO_REMAP
      |         ^
<command line>:3:9: note: previous definition is here
    3 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c bootstrapParticleFilterState.cpp -o bootstrapParticleFilterState.o
In file included from bootstrapParticleFilterState.cpp:1:
In file included from ./functions.h:9:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   29 | #define R_NO_REMAP
      |         ^
<command line>:3:9: note: previous definition is here
    3 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c cholArma.cpp -o cholArma.o
In file included from cholArma.cpp:1:
In file included from ./functions.h:9:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   29 | #define R_NO_REMAP
      |         ^
<command line>:3:9: note: previous definition is here
    3 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c mvrnormArma.cpp -o mvrnormArma.o
In file included from mvrnormArma.cpp:1:
In file included from ./functions.h:9:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   29 | #define R_NO_REMAP
      |         ^
<command line>:3:9: note: previous definition is here
    3 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-19 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c pmcmc.cpp -o pmcmc.o
In file included from pmcmc.cpp:1:
In file included from ./functions.h:9:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include/Rcpp/Benchmark/Timer.h:29:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   29 | #define R_NO_REMAP
      |         ^
<command line>:3:9: note: previous definition is here
    3 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-19 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o SimBIID.so RcppExports.o adaptUpdate.o bootstrapParticleFilter.o bootstrapParticleFilterState.o cholArma.o mvrnormArma.o pmcmc.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpkhxvzx/R.INSTALL3d50c44f7ecd0/SimBIID/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpkhxvzx/R.INSTALL3d50c44f7ecd0/SimBIID/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpkhxvzx/R.INSTALL3d50c44f7ecd0/SimBIID/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-SimBIID/00new/SimBIID/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SimBIID)