* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘Rlibeemd’ ...
** package ‘Rlibeemd’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Debian clang version 19.1.5 (1)’
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8kVHuc/R.INSTALL28075d5a22839f/Rlibeemd/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c bemd.c -o bemd.o
In file included from bemd.c:19:
In file included from ./bemd.h:25:
./array.h:3:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
3 | #define restrict // nothing
| ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c bemdR.cpp -o bemdR.o
In file included from bemdR.cpp:4:
In file included from ./bemd.h:25:
./array.h:62:46: warning: '_Complex' is a C99 extension [-Wc99-extensions]
62 | static inline void complex_array_copy(double _Complex const* restrict src, size_t n, double _Complex* restrict dest) {
| ^
./array.h:62:93: warning: '_Complex' is a C99 extension [-Wc99-extensions]
62 | static inline void complex_array_copy(double _Complex const* restrict src, size_t n, double _Complex* restrict dest) {
| ^
./array.h:63:37: warning: '_Complex' is a C99 extension [-Wc99-extensions]
63 | memcpy(dest, src, n*sizeof(double _Complex));
| ^
./array.h:66:45: warning: '_Complex' is a C99 extension [-Wc99-extensions]
66 | static inline void complex_array_sub(double _Complex const* src, size_t n, double _Complex* dest) {
| ^
./array.h:66:83: warning: '_Complex' is a C99 extension [-Wc99-extensions]
66 | static inline void complex_array_sub(double _Complex const* src, size_t n, double _Complex* dest) {
| ^
./array.h:71:46: warning: '_Complex' is a C99 extension [-Wc99-extensions]
71 | static inline void complex_array_mult(double _Complex* dest, size_t n, double val) {
| ^
In file included from bemdR.cpp:4:
./bemd.h:38:32: warning: '_Complex' is a C99 extension [-Wc99-extensions]
38 | libeemd_error_code bemd(double _Complex const* restrict input, size_t N,
| ^
./bemd.h:40:10: warning: '_Complex' is a C99 extension [-Wc99-extensions]
40 | double _Complex* restrict output, size_t M,
| ^
bemdR.cpp:23:57: warning: '_Complex' is a C99 extension [-Wc99-extensions]
23 | libeemd_error_code err = bemd(reinterpret_cast<double _Complex const*>(input.begin()), N,
| ^
bemdR.cpp:24:52: warning: '_Complex' is a C99 extension [-Wc99-extensions]
24 | directions.begin(), D, reinterpret_cast<double _Complex*>(output.begin()), M, num_siftings);
| ^
10 warnings generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c ceemdan.c -o ceemdan.o
In file included from ceemdan.c:19:
In file included from ./ceemdan.h:25:
In file included from ./eemd.h:10:
./extras.h:18:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
18 | #define restrict // nothing
| ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c ceemdanR.cpp -o ceemdanR.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c eemdR.cpp -o eemdR.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c eemd_routine.c -o eemd_routine.o
In file included from eemd_routine.c:19:
In file included from ./eemd_routine.h:26:
./array.h:3:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
3 | #define restrict // nothing
| ^
eemd_routine.c:60:15: warning: variable 'ensemble_counter' set but not used [-Wunused-but-set-variable]
60 | unsigned int ensemble_counter = 0;
| ^
2 warnings generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c emd.c -o emd.o
In file included from emd.c:19:
In file included from ./emd.h:26:
./array.h:3:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
3 | #define restrict // nothing
| ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c emd_num_imfsR.cpp -o emd_num_imfsR.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c error.c -o error.o
In file included from error.c:21:
In file included from ./error.h:22:
In file included from ./eemd.h:10:
./extras.h:18:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
18 | #define restrict // nothing
| ^
1 warning generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c extrema.c -o extrema.o
In file included from extrema.c:19:
In file included from ./extrema.h:25:
In file included from ./eemd.h:10:
./extras.h:18:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
18 | #define restrict // nothing
| ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c extremaR.cpp -o extremaR.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c gslErrorHandlerOff.cpp -o gslErrorHandlerOff.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c printError.cpp -o printError.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c spline.c -o spline.o
In file included from spline.c:19:
In file included from ./spline.h:29:
In file included from ./eemd.h:10:
./extras.h:18:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
18 | #define restrict // nothing
| ^
1 warning generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c version.c -o version.o
In file included from version.c:19:
In file included from ./version.h:24:
In file included from ./eemd.h:10:
./extras.h:18:9: warning: keyword is hidden by macro definition [-Wkeyword-macro]
18 | #define restrict // nothing
| ^
1 warning generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O3 -Wall -pedantic -c workspace.c -o workspace.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o Rlibeemd.so RcppExports.o bemd.o bemdR.o ceemdan.o ceemdanR.o eemdR.o eemd_routine.o emd.o emd_num_imfsR.o error.o extrema.o extremaR.o gslErrorHandlerOff.o printError.o spline.o version.o workspace.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8kVHuc/R.INSTALL28075d5a22839f/Rlibeemd/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8kVHuc/R.INSTALL28075d5a22839f/Rlibeemd/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8kVHuc/R.INSTALL28075d5a22839f/Rlibeemd/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-Rlibeemd/00new/Rlibeemd/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rlibeemd)