• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘RegrCoeffsExplorer/DESCRIPTION’ ... OK
• this is package ‘RegrCoeffsExplorer’ version ‘1.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘RegrCoeffsExplorer’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/18s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/9s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [51s/64s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘BetaVisualizer.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-4-1.png 1152x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17339 bytes Input file size = 18221 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13839   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13820   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13786   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13786 Output IDAT size = 13786 bytes (3553 bytes decrease) Output file size = 13864 bytes (4357 bytes = 23.91% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-5-1.png 672x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9635 bytes Input file size = 10505 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8548   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8544   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8544 Output IDAT size = 8544 bytes (1091 bytes decrease) Output file size = 8622 bytes (1883 bytes = 17.92% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-6-1.png 672x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10277 bytes Input file size = 11147 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9229   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9229 Output IDAT size = 9229 bytes (1048 bytes decrease) Output file size = 9307 bytes (1840 bytes = 16.51% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-7-1.png 1152x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31314 bytes Input file size = 31428 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27022   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27022 Output IDAT size = 27022 bytes (4292 bytes decrease) Output file size = 27100 bytes (4328 bytes = 13.77% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-8-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24759 bytes Input file size = 24873 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20906   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20906 Output IDAT size = 20906 bytes (3853 bytes decrease) Output file size = 20984 bytes (3889 bytes = 15.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-10-1.png 1152x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 14612 bytes Input file size = 15482 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13082   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13082 Output IDAT size = 13082 bytes (1530 bytes decrease) Output file size = 13160 bytes (2322 bytes = 15.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-12-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34342 bytes Input file size = 34468 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25988   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25988 Output IDAT size = 25988 bytes (8354 bytes decrease) Output file size = 26066 bytes (8402 bytes = 24.38% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-13-1.png 768x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 113294 bytes Input file size = 113528 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 90753   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 90753 Output IDAT size = 90753 bytes (22541 bytes decrease) Output file size = 90831 bytes (22697 bytes = 19.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-14-1.png 1152x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19323 bytes Input file size = 20205 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17459   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17382   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17382 Output IDAT size = 17382 bytes (1941 bytes decrease) Output file size = 17460 bytes (2745 bytes = 13.59% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-15-1.png 1152x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46228 bytes Input file size = 46366 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39212   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39212 Output IDAT size = 39212 bytes (7016 bytes decrease) Output file size = 39290 bytes (7076 bytes = 15.26% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/BetaVisualizer_files/figure-html/unnamed-chunk-17-1.png 1152x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15139 bytes Input file size = 16009 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13185   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13185 Output IDAT size = 13185 bytes (1954 bytes decrease) Output file size = 13263 bytes (2746 bytes = 17.15% decrease) Quitting from lines 499-504 [unnamed-chunk-21] (BetaVisualizer.Rmd) Error: processing vignette 'BetaVisualizer.Rmd' failed with diagnostics: dim(X) must have a positive length --- failed re-building ‘BetaVisualizer.Rmd’ --- re-building ‘OddsRatioVisualizer.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-5-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 22021 bytes Input file size = 22903 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19109   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19022   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19022 Output IDAT size = 19022 bytes (2999 bytes decrease) Output file size = 19100 bytes (3803 bytes = 16.60% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-6-1.png 768x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8227 bytes Input file size = 9097 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7142   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7138   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7138 Output IDAT size = 7138 bytes (1089 bytes decrease) Output file size = 7216 bytes (1881 bytes = 20.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-7-1.png 768x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13845 bytes Input file size = 14712 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12061   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11917   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11917 Output IDAT size = 11917 bytes (1928 bytes decrease) Output file size = 11995 bytes (2717 bytes = 18.47% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-11-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35747 bytes Input file size = 35873 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30289   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30289 Output IDAT size = 30289 bytes (5458 bytes decrease) Output file size = 30367 bytes (5506 bytes = 15.35% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-13-1.png 960x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 119822 bytes Input file size = 120068 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94659   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94659 Output IDAT size = 94659 bytes (25163 bytes decrease) Output file size = 94737 bytes (25331 bytes = 21.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-14-1.png 960x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 101553 bytes Input file size = 101775 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80186   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80186 Output IDAT size = 80186 bytes (21367 bytes decrease) Output file size = 80264 bytes (21511 bytes = 21.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RegrCoeffsExplorer.Rcheck/vign_test/RegrCoeffsExplorer/vignettes/OddsRatioVisualizer_files/figure-html/unnamed-chunk-15-1.png 768x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11223 bytes Input file size = 11313 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9825   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9825 Output IDAT size = 9825 bytes (1398 bytes decrease) Output file size = 9903 bytes (1410 bytes = 12.46% decrease) --- finished re-building ‘OddsRatioVisualizer.Rmd’ SUMMARY: processing the following file failed:   ‘BetaVisualizer.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR