• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘R0/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘R0’ version ‘1.3-1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘R0’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/12s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) est.R0.ML.Rd:98: Lost braces     98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.        | ^ checkRd: (-1) plot.R0.R.Rd:20: Lost braces     20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.        | ^ checkRd: (-1) plot.R0.sR.Rd:20: Lost braces     20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [6s/8s] OK Examples with CPU (user + system) or elapsed time > 5s                       user system elapsed sensitivity.analysis 4.601 0.132 5.794
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/14s] OK   Running ‘check.incid.R’ [0s/1s]   Running ‘est.GT.R’ [0s/0s]   Running ‘est.R0.AR.R’ [0s/0s]   Running ‘est.R0.EG.R’ [0s/1s]   Running ‘est.R0.ML.R’ [0s/1s]   Running ‘est.R0.SB.R’ [1s/1s]   Running ‘est.R0.TD.R’ [1s/1s]   Running ‘estimate.R.R’ [1s/1s]   Running ‘generation.time.R’ [0s/0s]   Running ‘sensitivity.analysis.R’ [5s/6s]   Running ‘sim.epid.R’ [0s/0s]   Running ‘smooth.Rt.R’ [0s/1s]
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE