* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/Phase12Compare.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘Phase12Compare/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Phase12Compare’ version ‘1.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘Phase12Compare’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/Phase12Compare-00install.html' for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/13s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                 ^
checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                          ^
checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                   ^
checkRd: (-1) GetEfftoxContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                            ^
checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                  ^
checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                             ^
checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                        ^
checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                   ^
checkRd: (-1) GetEfftoxContour.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                              ^
checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                         ^
checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                    ^
checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                               ^
checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                          ^
checkRd: (-1) GetEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                                     ^
checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                  ^
checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                             ^
checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                        ^
checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                   ^
checkRd: (-1) GetEfftoxUt.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                              ^
checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                         ^
checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                    ^
checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                               ^
checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                          ^
checkRd: (-1) GetEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                                     ^
checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                 ^
checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                          ^
checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                   ^
checkRd: (-1) GetSpsoContour.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                            ^
checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                 ^
checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                          ^
checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                   ^
checkRd: (-1) SimEfftoxContour.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                            ^
checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                  ^
checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                             ^
checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                        ^
checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                   ^
checkRd: (-1) SimEfftoxContour.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                              ^
checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                         ^
checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                    ^
checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                               ^
checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                          ^
checkRd: (-1) SimEfftoxContour.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                                     ^
checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                  ^
checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                             ^
checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                        ^
checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                   ^
checkRd: (-1) SimEfftoxUt.Rd:49: Lost braces; missing escapes or markup?
    49 | \item{HypermeansEFF}{Hypermeans for the Efftox model. In order, entries are hypermeans for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                              ^
checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                         ^
checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                    ^
checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                               ^
checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                          ^
checkRd: (-1) SimEfftoxUt.Rd:51: Lost braces; missing escapes or markup?
    51 | \item{HypervarsEFF}{Hypervariances for the Efftox model. In order, entries are hypervariances for (beta_{0,E},beta_{1,E},beta_{2,E},beta_{0,T},beta_{1,T},psi).}
       |                                                                                                                                                     ^
checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                 ^
checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                          ^
checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                   ^
checkRd: (-1) SimSpsoContour.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{Contour}{Contour vector for desirability function. Contains in order: (pi_{1,E},pi_{2,T},pi_{3,E},pi_{4,T}).}
       |                                                                                                            ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [5s/7s] OK
* checking PDF version of manual ... [5s/7s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE