* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/NetworkToolbox.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘NetworkToolbox/DESCRIPTION’ ... OK
* this is package ‘NetworkToolbox’ version ‘1.4.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NetworkToolbox’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/NetworkToolbox-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
* checking loading without being on the library search path ... [0s/1s] OK
* checking whether startup messages can be suppressed ... [0s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/29s] OK
* checking Rd files ... [1s/1s] NOTE
checkRd: (-1) MFCF.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MFCF.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MFCF.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MFCF.Rd:47-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) comm.str.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) comm.str.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cpm.Rd:153-160: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cpm.Rd:164-166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cpm.Rd:170-174: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cpm.Rd:178-179: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cpm.Rd:183-184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cpm.Rd:188: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dCor.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dCor.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:79-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:85-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:91-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:56-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gain.functions.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:30-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) openness.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.chordal.Rd:26-30: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convert2igraph.Rd: igraph
  sim.chordal.Rd: psych
  sim.swn.Rd: psych
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [16s/20s] OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
ECOplusMaST 3.893  0.305    5.15
* checking PDF version of manual ... [7s/8s] OK
* checking HTML version of manual ... [3s/6s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 2 NOTEs