• using R Under development (unstable) (2024-11-06 r87293)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.2 (2)     Debian flang-new version 19.1.2 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘MXM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MXM’ version ‘1.5.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MXM’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/6s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [5s/7s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/7s] OK
• checking loading without being on the library search path ... [5s/6s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [239s/299s] OK
• checking Rd files ... [2s/2s] NOTE checkRd: (-1) bbc.Rd:39: Lost braces     39 | The "nbdev.mxm" (negative binomial deviance) is missing. For more information on these see \code{\link{cv.ses}}. bold{Note} that they come with "".        | ^ checkRd: (-1) cv.fbed.lmm.reg.Rd:32: Lost braces; missing escapes or markup?     32 | The folds of the data to use (a list generated by the function generateCVRuns {TunePareto}). If NULL the folds are created internally with the same function.        | ^ checkRd: (-1) cv.gomp.Rd:29: Lost braces; missing escapes or markup?     29 | The folds of the data to use (a list generated by the function generateCVRuns {TunePareto}). If NULL the folds are created internally with the same function.        | ^ checkRd: (-1) cv.ses.Rd:94: Lost braces; missing escapes or markup?     94 | The folds of the data to use (a list generated by the function generateCVRuns {TunePareto}). If NULL the folds are created internally with the same function.        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   censIndCR.Rd: Surv   gomp.Rd: cor.fbed, cor.fsreg, correls   logiquant.regs.Rd: bic.regs   pc.sel.Rd: omp   sp.logiregs.Rd: bic.regs   testIndTobit.Rd: Surv, survreg   wald.logisticregs.Rd: score.glms Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [32s/42s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [46s/69s] OK
• checking PDF version of manual ... [14s/20s] OK
• checking HTML version of manual ... [7s/13s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs