• using R Under development (unstable) (2024-12-25 r87466)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.6 (1)     Debian flang-new version 19.1.6 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘MMLR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MMLR’ version ‘0.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘MMLR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup?     25 | Matrix Q is so-called Generator matrix: \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$,        | ^ checkRd: (-1) Aver_soj_time.Rd:25: Lost braces; missing escapes or markup?     25 | Matrix Q is so-called Generator matrix: \eqn{Q=\lambda-\Lambda, where \lambda} is matrix with known transition rates from state $s_{i}$ to state $s_{j}$,        | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup?     34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X.        | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup?     34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X.        | ^ checkRd: (-1) B_est.Rd:34: Lost braces; missing escapes or markup?     34 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time, $t_{i}$ is an element of tGiven, $x_{i}$ is a vector of matrix X.        | ^ checkRd: (-1) VarY.Rd:31: Lost braces; missing escapes or markup?     31 | where vector of average sojourn times in each state $t_{i}$ is calculated using function Aver_soj_time        | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?     30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$        | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?     30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$        | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?     30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$        | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces; missing escapes or markup?     30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$        | ^ checkRd: (-1) Ysimulation.Rd:30: Lost braces     30 | The i-th response $Y_{i}$ is defined by the following formula: $Y_{i}(t)=x_{i}\eqn{\beta} + Z_{i} sqrt{t}, i=1,...,n.$        | ^ checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup?     29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$).        | ^ checkRd: (-1) randomizeTau.Rd:29: Lost braces; missing escapes or markup?     29 | Initial values of observation times are multiplied by a random value ($tau_{i}$ x k x rnd(0, 1)). All times are independent and time of ith observation has uniform distribution on (0, k$tau_{i}$).        | ^ checkRd: (-1) randomizeX.Rd:41: Lost braces; missing escapes or markup?     41 | Random perturbations are added to the initial values of matrix X elements ($X_{i,j}$ + rnd), which are distributed according to a chosen distribution (possible alternatives: uniform, exponential and gamma distribution).        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking examples ... [3s/4s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE