* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ILSE.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘ILSE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ILSE’ version ‘1.1.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘ILSE’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/ILSE-00install.html' for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the package can be unloaded cleanly ... [0s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
* checking loading without being on the library search path ... [0s/1s] OK
* checking whether startup messages can be suppressed ... [0s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/8s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) cor.mat.Rd:17: Lost braces; missing escapes or markup?
    17 |   The argument rho specify the size of correlation coeffient. As for argument type, if type='toeplitz', sigma_ij=rho^{|i-j|}; if type ='identity', sigma_{ij}=rho when i!=j and sigma_{ij}=1 when i=j.
       |                                                                                                                      ^
checkRd: (-1) cor.mat.Rd:17: Lost braces; missing escapes or markup?
    17 |   The argument rho specify the size of correlation coeffient. As for argument type, if type='toeplitz', sigma_ij=rho^{|i-j|}; if type ='identity', sigma_{ij}=rho when i!=j and sigma_{ij}=1 when i=j.
       |                                                                                                                                                          ^
checkRd: (-1) cor.mat.Rd:17: Lost braces; missing escapes or markup?
    17 |   The argument rho specify the size of correlation coeffient. As for argument type, if type='toeplitz', sigma_ij=rho^{|i-j|}; if type ='identity', sigma_{ij}=rho when i!=j and sigma_{ij}=1 when i=j.
       |                                                                                                                                                                                       ^
checkRd: (-1) cov.mat.Rd:17: Lost braces; missing escapes or markup?
    17 |   The argument rho specify the size of correlation coeffient. As for argument type, if type='toeplitz', sigma_ij=rho^{|i-j|}; if type ='identity', sigma_{ij}=rho when i!=j and sigma_{ij}=1 when i=j.
       |                                                                                                                      ^
checkRd: (-1) cov.mat.Rd:17: Lost braces; missing escapes or markup?
    17 |   The argument rho specify the size of correlation coeffient. As for argument type, if type='toeplitz', sigma_ij=rho^{|i-j|}; if type ='identity', sigma_{ij}=rho when i!=j and sigma_{ij}=1 when i=j.
       |                                                                                                                                                          ^
checkRd: (-1) cov.mat.Rd:17: Lost braces; missing escapes or markup?
    17 |   The argument rho specify the size of correlation coeffient. As for argument type, if type='toeplitz', sigma_ij=rho^{|i-j|}; if type ='identity', sigma_{ij}=rho when i!=j and sigma_{ij}=1 when i=j.
       |                                                                                                                                                                                       ^
checkRd: (-1) nhanes.Rd:9: Lost braces; missing escapes or markup?
     9 | age: {Age group (1=20-39, 2=40-59, 3=60+).}
       |      ^
checkRd: (-1) nhanes.Rd:11: Lost braces; missing escapes or markup?
    11 | {bmi: }{Body mass index (kg/m**2).}
       | ^
checkRd: (-1) nhanes.Rd:11: Lost braces
    11 | {bmi: }{Body mass index (kg/m**2).}
       |        ^
checkRd: (-1) nhanes.Rd:13: Lost braces; missing escapes or markup?
    13 | {hyp: }{Hypertensive (1=no,2=yes).}
       | ^
checkRd: (-1) nhanes.Rd:13: Lost braces
    13 | {hyp: }{Hypertensive (1=no,2=yes).}
       |        ^
checkRd: (-1) nhanes.Rd:15: Lost braces; missing escapes or markup?
    15 | {chl: }{Total serum cholesterol (mg/dL).}
       | ^
checkRd: (-1) nhanes.Rd:15: Lost braces
    15 | {chl: }{Total serum cholesterol (mg/dL).}
       |        ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [6s/10s] OK
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [0s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 2 NOTEs