* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘GpGp’ ...
** package ‘GpGp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6swvGk/R.INSTALL31b8042bc57f7f/GpGp/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c matrix_mult.cpp -o matrix_mult.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c vecchia_loglik_grad_info.cpp -o vecchia_loglik_grad_info.o
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:10:
./covmatrix_funs_02.h:727:12: warning: unused variable 'nugget' [-Wunused-variable]
727 | double nugget = covparms( 0 )*covparms( 7 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:11:
./covmatrix_funs_03.h:95:12: warning: unused variable 'nugget' [-Wunused-variable]
95 | double nugget = covparms( 0 )*covparms( dim + 2 );
| ^~~~~~
./covmatrix_funs_03.h:229:12: warning: unused variable 'nugget' [-Wunused-variable]
229 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
./covmatrix_funs_03.h:337:12: warning: unused variable 'nugget' [-Wunused-variable]
337 | double nugget = covparms( 0 )*covparms( 4 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:17:
./covmatrix_funs_09.h:89:12: warning: unused variable 'nugget' [-Wunused-variable]
89 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:18:
./covmatrix_funs_10.h:187:12: warning: unused variable 'nugget' [-Wunused-variable]
187 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:19:
./covmatrix_funs_11.h:206:12: warning: unused variable 'nugget' [-Wunused-variable]
206 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:20:
./covmatrix_funs_12.h:209:12: warning: unused variable 'nugget' [-Wunused-variable]
209 | double nugget = covparms( 0 )*covparms( dim + 1 );
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
In file included from ./onepass.h:8:
In file included from ./covmatrix_funs.h:21:
./covmatrix_funs_13.h:126:12: warning: unused variable 'nugget' [-Wunused-variable]
126 | double nugget = covparms( 0 )*covparms( 4 );
| ^~~~~~
./covmatrix_funs_13.h:127:9: warning: unused variable 'categ' [-Wunused-variable]
127 | double categ = covparms(0)*covparms(3);
| ^~~~~
./covmatrix_funs_13.h:542:12: warning: unused variable 'nugget' [-Wunused-variable]
542 | double nugget = covparms(0)*covparms(8);
| ^~~~~~
In file included from vecchia_loglik_grad_info.cpp:8:
./onepass.h:93:10: warning: variable 'pd' set but not used [-Wunused-but-set-variable]
93 | bool pd = true;
| ^
./onepass.h:700:9: warning: unused variable 'dim' [-Wunused-variable]
700 | int dim = locs.ncol();
| ^~~
13 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o GpGp.so RcppExports.o matrix_mult.o vecchia_loglik_grad_info.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6swvGk/R.INSTALL31b8042bc57f7f/GpGp/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6swvGk/R.INSTALL31b8042bc57f7f/GpGp/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6swvGk/R.INSTALL31b8042bc57f7f/GpGp/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-GpGp/00new/GpGp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GpGp)