* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘GSE’ ...
** package ‘GSE’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.3 (2)’
using C++ compiler: ‘Debian clang version 19.1.3 (2)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplMdK1m/R.INSTALL1ce4a8722bd13/GSE/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c cov-em.cpp -o cov-em.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c emve.cpp -o emve.o
emve.cpp:153:16: warning: variable 'max_cand_scale' set but not used [-Wunused-but-set-variable]
  153 |         double max_cand_scale;
      |                ^
emve.cpp:154:16: warning: variable 'min_cand_scale' set but not used [-Wunused-but-set-variable]
  154 |         double min_cand_scale;
      |                ^
2 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c gse-rocke.cpp -o gse-rocke.o
gse-rocke.cpp:46:6: warning: unused variable 'print_step' [-Wunused-variable]
   46 |         int print_step = as<int>(Print_step);
      |             ^~~~~~~~~~
gse-rocke.cpp:131:6: warning: unused variable 'ximp_update' [-Wunused-variable]
  131 |         int ximp_update = update(x, Omega, Sigma0, false, mu0, stilde0, miss_group_unique, miss_group_counts, tuning_const_group, gamma_tune_group, wgts_mem, wgtsp_mem, ximp_mem);
      |             ^~~~~~~~~~~
gse-rocke.cpp:162:6: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
  162 |         int error_code = *error_code_mem; // 0 = no error, 1 = non-positive scale, 2 = non-positive definite est scatter
      |             ^
gse-rocke.cpp:295:6: warning: unused variable 'n' [-Wunused-variable]
  295 |         int n = x.n_rows;
      |             ^
gse-rocke.cpp:416:12: warning: unused variable 'weight2' [-Wunused-variable]
  416 |                                 double weight2 = weight1 * (md / ppi);
      |                                        ^~~~~~~
5 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c gse.cpp -o gse.o
gse.cpp:41:9: warning: unused variable 'print_step' [-Wunused-variable]
   41 |     int print_step = as<int>(Print_step);
      |         ^~~~~~~~~~
gse.cpp:102:9: warning: unused variable 'ximp_update' [-Wunused-variable]
  102 |     int ximp_update = update(x, Omega, Sigma0, false, mu0, stilde0, miss_group_unique, miss_group_counts, tuning_const_group, wgts_mem, wgtsp_mem, ximp_mem);
      |         ^~~~~~~~~~~
gse.cpp:132:9: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
  132 |     int error_code = *error_code_mem; // 0 = no error, 1 = non-positive scale, 2 = non-positive definite est scatter
      |         ^
gse.cpp:337:24: warning: unused variable 'weight2' [-Wunused-variable]
  337 |                 double weight2 = weight1 * (md / ppi);
      |                        ^~~~~~~
4 warnings generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o GSE.so cov-em.o emve.o gse-rocke.o gse.o init.o -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplMdK1m/R.INSTALL1ce4a8722bd13/GSE/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplMdK1m/R.INSTALL1ce4a8722bd13/GSE/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplMdK1m/R.INSTALL1ce4a8722bd13/GSE/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-GSE/00new/GSE/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GSE)