* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GPCsign.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘GPCsign/DESCRIPTION’ ... OK
* this is package ‘GPCsign’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘GPCsign’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/GPCsign-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
* checking whether the package can be unloaded cleanly ... [2s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
* checking loading without being on the library search path ... [2s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/15s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [16s/20s] OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
gpcm        6.587  0.130   8.219
update.gpcm 4.786  0.053   5.389
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [90s/107s] ERROR
  Running ‘testthat.R’ [90s/107s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > ## load dependencies
  > library(testthat)
  > 
  > ## test package
  > test_check('GPCsign')
  Loading required package: GPCsign
  [ FAIL 6 | WARN 0 | SKIP 0 | PASS 9 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-GPCmodel.R:32:5'): Check GPC coef.m and coef.cov ─────────────
  ... && ... is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-GPCmodel.R:43:3'): Check GPC logLik ──────────────────────────
  max(abs((model@logLik - logLik)/logLik)) < precision is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-GPCmodel.R:32:5'): Check GPC coef.m and coef.cov ─────────────
  ... && ... is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-GPCmodel.R:43:3'): Check GPC logLik ──────────────────────────
  max(abs((model@logLik - logLik)/logLik)) < precision is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-GPCmodel.R:39:3'): Check GPC Z_obs ───────────────────────────
  max(abs((model@Z_obs - Z_obs)/Z_obs)) < precision is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-GPCmodel.R:219:1'): Check GPC coef.m and coef.cov ────────────
  (abs((m8@coef.m - coef.m)) < 1e-04) && ... is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 6 | WARN 0 | SKIP 0 | PASS 9 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [0s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR