- using R Under development (unstable) (2025-02-26 r87830)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (1+b1)
Debian flang-new version 19.1.7 (1+b1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘GPCsign/DESCRIPTION’ ... OK
- this is package ‘GPCsign’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘GPCsign’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/15s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [16s/20s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gpcm 6.587 0.130 8.219
update.gpcm 4.786 0.053 5.389
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [90s/107s] ERROR
Running ‘testthat.R’ [90s/107s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ## load dependencies
> library(testthat)
>
> ## test package
> test_check('GPCsign')
Loading required package: GPCsign
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 9 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-GPCmodel.R:32:5'): Check GPC coef.m and coef.cov ─────────────
... && ... is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-GPCmodel.R:43:3'): Check GPC logLik ──────────────────────────
max(abs((model@logLik - logLik)/logLik)) < precision is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-GPCmodel.R:32:5'): Check GPC coef.m and coef.cov ─────────────
... && ... is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-GPCmodel.R:43:3'): Check GPC logLik ──────────────────────────
max(abs((model@logLik - logLik)/logLik)) < precision is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-GPCmodel.R:39:3'): Check GPC Z_obs ───────────────────────────
max(abs((model@Z_obs - Z_obs)/Z_obs)) < precision is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-GPCmodel.R:219:1'): Check GPC coef.m and coef.cov ────────────
(abs((m8@coef.m - coef.m)) < 1e-04) && ... is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 9 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR