* using log directory ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ClinicalUtilityRecal.Rcheck’
* using R Under development (unstable) (2025-02-23 r87804)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘ClinicalUtilityRecal/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ClinicalUtilityRecal’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘ClinicalUtilityRecal’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/ClinicalUtilityRecal-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/6s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
* checking loading without being on the library search path ... [4s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s/28s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) RAWgrid.Rd:58: Lost braces
    58 | {Event rate outside RAW interval, widen RAW interval}{If no or too cases are inside RAW interval [R_{l},R_{u}], cross-validation procedure may not be stable, so this warning indicates RAW interval should widen to include more cases.}
       |                                                      ^
checkRd: (-1) RAWgrid.Rd:58: Lost braces; missing escapes or markup?
    58 | {Event rate outside RAW interval, widen RAW interval}{If no or too cases are inside RAW interval [R_{l},R_{u}], cross-validation procedure may not be stable, so this warning indicates RAW interval should widen to include more cases.}
       |                                                                                                     ^
checkRd: (-1) RAWgrid.Rd:58: Lost braces; missing escapes or markup?
    58 | {Event rate outside RAW interval, widen RAW interval}{If no or too cases are inside RAW interval [R_{l},R_{u}], cross-validation procedure may not be stable, so this warning indicates RAW interval should widen to include more cases.}
       |                                                                                                           ^
checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?
    33 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                          ^
checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?
    33 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                                ^
checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?
    33 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                                                                                                                                                  ^
checkRd: (-1) cvReptWtTuning.Rd:33: Lost braces; missing escapes or markup?
    33 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?
    28 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                          ^
checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?
    28 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                                ^
checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?
    28 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                                                                                                                                                  ^
checkRd: (-1) cvWtTuning.Rd:28: Lost braces; missing escapes or markup?
    28 |   Parameter to be selected via cross-validation. Can be either \eqn{delta} the weight assigned to observations outside the clinically relevant region [R_{l},R_{u}], or the \eqn{lambda} tuning parameter controlling exponential decay within the clinically relevant region [R_{l},R_{u}]}
       |                                                                                                                                                                                                                                                                                        ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [8s/11s] OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
RAWgrid 3.336   0.21   5.424
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE