* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘BayesSurvive’ ...
** this is package ‘BayesSurvive’ version ‘0.0.2’
** package ‘BayesSurvive’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-19 -std=gnu++17 accepts -g... yes
checking for clang++-19 -std=gnu++17 option to enable C++11 features... none needed
checking whether CXX supports -std=c++17... yes
checking for clang++-19 -std=gnu++17 option to support OpenMP... -fopenmp
checking whether OpenMP will actually work in a package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Debian clang version 19.1.7 (1+b1)’
using C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8bBzum/R.INSTALL1335a047326e03/BayesSurvive/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c RcppExports.cpp -o RcppExports.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c settingInterval.cpp -o settingInterval.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw  -c updateRP_genomic_cpp.cpp -o updateRP_genomic_cpp.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o BayesSurvive.so RcppExports.o init.o settingInterval.o updateRP_genomic_cpp.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8bBzum/R.INSTALL1335a047326e03/BayesSurvive/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8bBzum/R.INSTALL1335a047326e03/BayesSurvive/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8bBzum/R.INSTALL1335a047326e03/BayesSurvive/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-BayesSurvive/00new/BayesSurvive/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesSurvive)