• using R Under development (unstable) (2024-12-21 r87453)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.5 (1)     Debian flang-new version 19.1.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘BGmisc/DESCRIPTION’ ... OK
• this is package ‘BGmisc’ version ‘1.3.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking: 'EasyMx', 'OpenMx'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BGmisc’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/18s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [7s/9s] OK   Running ‘testthat.R’ [7s/8s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [20s/27s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘analyticrelatedness.Rmd’ using rmarkdown --- finished re-building ‘analyticrelatedness.Rmd’ --- re-building ‘modelingrelatedness.Rmd’ using rmarkdown Quitting from lines 41-44 [unnamed-chunk-2] (modelingrelatedness.Rmd) Error: processing vignette 'modelingrelatedness.Rmd' failed with diagnostics: there is no package called 'EasyMx' --- failed re-building ‘modelingrelatedness.Rmd’ --- re-building ‘network.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BGmisc.Rcheck/vign_test/BGmisc/vignettes/network_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7337 bytes Input file size = 8195 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6594   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6594 Output IDAT size = 6594 bytes (743 bytes decrease) Output file size = 6672 bytes (1523 bytes = 18.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BGmisc.Rcheck/vign_test/BGmisc/vignettes/network_files/figure-html/unnamed-chunk-11-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6390 bytes Input file size = 7248 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5678   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5678 Output IDAT size = 5678 bytes (712 bytes decrease) Output file size = 5756 bytes (1492 bytes = 20.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BGmisc.Rcheck/vign_test/BGmisc/vignettes/network_files/figure-html/unnamed-chunk-13-1.png 288x288 pixels, 8 bits/pixel, 238 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2267 bytes Input file size = 3071 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1897   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1897 Output IDAT size = 1897 bytes (370 bytes decrease) Output file size = 1975 bytes (1096 bytes = 35.69% decrease) --- finished re-building ‘network.Rmd’ --- re-building ‘pedigree.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BGmisc.Rcheck/vign_test/BGmisc/vignettes/pedigree_files/figure-html/unnamed-chunk-5-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 14886 bytes Input file size = 15756 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12918   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12825   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12825 Output IDAT size = 12825 bytes (2061 bytes decrease) Output file size = 12903 bytes (2853 bytes = 18.11% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/BGmisc.Rcheck/vign_test/BGmisc/vignettes/pedigree_files/figure-html/unnamed-chunk-6-1.png 768x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12182 bytes Input file size = 13052 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10395   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10395 Output IDAT size = 10395 bytes (1787 bytes decrease) Output file size = 10473 bytes (2579 bytes = 19.76% decrease) --- finished re-building ‘pedigree.Rmd’ --- re-building ‘validation.Rmd’ using rmarkdown --- finished re-building ‘validation.Rmd’ SUMMARY: processing the following file failed:   ‘modelingrelatedness.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR