* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘APIS’ ...
** package ‘APIS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.6 (1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE5KE5H/R.INSTALL3e6ef13477626/APIS/src'
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c APIS_init_Recom.c -o APIS_init_Recom.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c calculate_likelihood.c -o calculate_likelihood.o
calculate_likelihood.c:503:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
  503 |           if ((allele_A == 0)) {
      |                ~~~~~~~~~^~~~
calculate_likelihood.c:503:25: note: remove extraneous parentheses around the comparison to silence this warning
  503 |           if ((allele_A == 0)) {
      |               ~         ^   ~
calculate_likelihood.c:503:25: note: use '=' to turn this equality comparison into an assignment
  503 |           if ((allele_A == 0)) {
      |                         ^~
      |                         =
calculate_likelihood.c:607:25: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
  607 |           if ((allele_A == 0)) {
      |                ~~~~~~~~~^~~~
calculate_likelihood.c:607:25: note: remove extraneous parentheses around the comparison to silence this warning
  607 |           if ((allele_A == 0)) {
      |               ~         ^   ~
calculate_likelihood.c:607:25: note: use '=' to turn this equality comparison into an assignment
  607 |           if ((allele_A == 0)) {
      |                         ^~
      |                         =
2 warnings generated.
clang-19 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o APIS.so APIS_init_Recom.o calculate_likelihood.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE5KE5H/R.INSTALL3e6ef13477626/APIS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE5KE5H/R.INSTALL3e6ef13477626/APIS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE5KE5H/R.INSTALL3e6ef13477626/APIS/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-APIS/00new/APIS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (APIS)