• using R Under development (unstable) (2025-01-19 r87600)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.6 (1+b1)     Debian flang-new version 19.1.6 (1+b1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘APCalign/DESCRIPTION’ ... OK
• this is package ‘APCalign’ version ‘1.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘APCalign’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/18s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/3s] ERROR   Running ‘testthat.R’ [2s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(APCalign)   >   > test_check("APCalign")   Downloading...   trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'   Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet'   trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'   Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet'      Loading resources into memory...      ===========================Error in `FUN()`:   ! In path: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"   Caused by error in `UseMethod()`:   ! no applicable method for 'rename' applied to an object of class "NULL"   Backtrace:        ▆     1. ├─testthat::test_check("APCalign")     2. │ └─testthat::test_dir(...)     3. │ └─testthat:::test_files(...)     4. │ └─testthat:::test_files_serial(...)     5. │ └─testthat:::test_files_setup_state(...)     6. │ └─testthat::source_test_helpers(".", env)     7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)     8. │ └─base::lapply(...)     9. │ └─testthat (local) FUN(X[[i]], ...)    10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)    11. │ ├─base::withCallingHandlers(...)    12. │ └─base::eval(exprs, env)    13. │ └─base::eval(exprs, env)    14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3    15. │ └─... %>% ...    16. ├─dplyr::mutate(., genus = extract_genus(canonical_name), taxon_rank = standardise_taxon_rank(taxon_rank))    17. ├─dplyr::rename(., dplyr::any_of(column_rename))    18. └─base::.handleSimpleError(...)    19. └─testthat (local) h(simpleError(msg, call))    20. └─rlang::abort(...)   Warning messages:   1: In utils::download.file(url, path_to_file, mode = "wb") :     cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet': HTTP status was '404 Not Found'   2: In utils::download.file(url, path_to_file, mode = "wb") :     cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet': HTTP status was '404 Not Found'   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/7s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR