Running ‘testthat.R’ [42s/201s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > library(campsis)
  Loading required package: campsismod
  
  Attaching package: 'campsismod'
  
  The following object is masked from 'package:utils':
  
      find
  
  The following objects are masked from 'package:base':
  
      Position, as.data.frame, replace, sort, toString, write
  
  
  Attaching package: 'campsis'
  
  The following object is masked from 'package:stats':
  
      simulate
  
  The following object is masked from 'package:base':
  
      sample
  
  > test_check("campsis")
  [ FAIL 44 | WARN 0 | SKIP 25 | PASS 289 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • empty test (25)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (testRUV.R:12:3): Test RUV generated with RxODE & mrgsolve is correct ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset = ds, dest = "RxODE", seed = 1) at testRUV.R:12:2
   2. └─campsis::simulate(., dataset = ds, dest = "RxODE", seed = 1)
   3.   └─campsis:::preprocessDest(dest)
  ── Failure (testSimulateArguments.R:34:3): Auto seed value vs fix seed + default engine ──
  all(c("KA", "CL", "V2") %in% colnames(results1)) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Error (testSimulateBioavailability.R:20:3): Simulate a bolus, 2 arms, F1 only in arm1, in dataset ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateBioavailability.R:20:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateBioavailability.R:38:3): Simulate a simple bolus with bioavailability (dataset versus model) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateBioavailability.R:38:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateBioavailability.R:78:3): Simulate several fixed fs at once ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% disable("IIV") %>% ... at testSimulateBioavailability.R:78:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateBolus.R:17:3): Simulate a bolus (RxODE/mrgsolve) ─────────
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateBolus.R:17:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateBolus.R:44:3): Simulate a bolus, 2 arms (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateBolus.R:44:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateBolus.R:72:3): Simulate a bolus, 2 labelled arms (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateBolus.R:72:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateBolusInfusionSameCmt.R:20:3): Bolus and infusion in CMT 1 ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateBolusInfusionSameCmt.R:20:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateCmtCharacteristics.R:14:3): Add lag time to model ────────
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateCmtCharacteristics.R:14:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateCmtCharacteristics.R:30:3): Add bioavailability to model ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateCmtCharacteristics.R:30:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateCmtCharacteristics.R:43:3): Add infusion rate to model ───
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateCmtCharacteristics.R:43:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateCmtCharacteristics.R:55:3): Add infusion duration to model ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateCmtCharacteristics.R:55:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateCmtCharacteristics.R:71:3): Reproduce RxODE bug with a minimalist example ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateCmtCharacteristics.R:71:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateDeclare.R:20:3): Declare argument with mrgsolve ──────────
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateDeclare.R:20:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed, tablefun = tablefun)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateDoseAdaptation.R:18:3): Dose adaptations based on weight work well (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateDoseAdaptation.R:18:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateDoseAdaptation.R:40:3): Dose adaptations preserve specified infusion duration (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateDoseAdaptation.R:40:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateDoseAdaptation.R:70:3): Dose adaptations preserve specified infusion rate (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateDoseAdaptation.R:70:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateDoseAdaptation.R:98:3): Dose adaptations based on weight work well, check argument compartments works as expected (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateDoseAdaptation.R:98:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateDosingInfo.R:18:3): Dose adaptations can be checked in CAMPSIS output if dosing is TRUE (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateDosingInfo.R:18:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateInfusion.R:58:3): Simulate infusion using rate in dataset ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateInfusion.R:58:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateInfusion.R:102:3): Simulate infusion using rate and lag time in dataset ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateInfusion.R:102:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateInfusion.R:126:3): Simulate infusion using rate and lag time (parameter distribution) in dataset ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateInfusion.R:126:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateInit.R:17:3): Simulate initial conditions, observations starting at 0 (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateInit.R:17:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateInit.R:36:3): Simulate initial conditions, observations starting at 5 (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateInit.R:36:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateLagTime.R:16:3): Simulate a bolus with fixed lag time in dataset ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateLagTime.R:16:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateLagTime.R:40:3): Simulate a bolus with fixed lag time in model ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateLagTime.R:40:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateMinimalistModel.R:15:3): Simulate a minimalist model (no parameter files, no IIV & error model) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateMinimalistModel.R:15:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateNoOmega.R:21:3): Simulate a 1-cpt model without OMEGA's/SIGMA's (Github issue #8) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateNoOmega.R:21:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateOutvars.R:13:3): NULL outvars (RxODE/mrgsolve) ───────────
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateOutvars.R:13:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateOutvars.R:27:3): Not NULL outvars (RxODE/mrgsolve) ───────
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateOutvars.R:27:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed, outvars = "KA")
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateOutvars.R:41:3): Not NULL outvars + DROP_OTHERS (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateOutvars.R:41:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateOutvars.R:55:3): Not NULL outvars from ERROR block + DROP_OTHERS (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateOutvars.R:55:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateOutvars.R:70:3): Covariates in outvars can be output well (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateOutvars.R:70:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateOutvars.R:84:3): ETAs in outvars can be output well (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateOutvars.R:84:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateScenarios.R:21:3): Simulate scenarios - make few changes on dataset (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateScenarios.R:21:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateScenarios.R:65:3): Simulate scenarios - make few changes on model (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateScenarios.R:65:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateTable.R:18:3): Simulate a bolus (RxODE/mrgsolve) by giving the exported dataset (table form) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(table, dest = "RxODE", seed = seed) at testSimulateTable.R:18:2
   2. └─campsis::simulate(., table, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateTimeVaryingCovariates.R:19:3): Body weight as a true time varying covariate (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% ... at testSimulateTimeVaryingCovariates.R:19:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateTimeVaryingCovariates.R:52:3): Body weight as a true time varying covariate, 2 arms, individual body weights (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% disable("IIV") %>% ... at testSimulateTimeVaryingCovariates.R:52:2
   2. └─campsis::simulate(...)
   3.   └─campsis:::preprocessDest(dest)
  ── Failure (testSimulateWeirdCases.R:12:3): Simulate a bolus without observation ──
  `model %>% simulate(dataset, dest = "RxODE", seed = seed)` threw an error with unexpected message.
  Expected match: "Dataset does not contain any observation"
  Actual message: "Simulation engine 'RxODE' is not installed"
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at testSimulateWeirdCases.R:12:2
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed)
   7. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   8.   └─campsis:::preprocessDest(dest)
  ── Error (testSimulateWeirdCases.R:22:3): Simulate a bolus with single observation at time 0 (RxODE/mrgsolve) ──
  Error in `preprocessDest(dest)`: Simulation engine 'RxODE' is not installed
  Backtrace:
      ▆
   1. ├─model %>% simulate(dataset, dest = "RxODE", seed = seed) at testSimulateWeirdCases.R:22:2
   2. └─campsis::simulate(., dataset, dest = "RxODE", seed = seed)
   3.   └─campsis:::preprocessDest(dest)
  ── Failure (testSimulateWeirdCases.R:41:3): Simulate a model which is not valid ──
  `model %>% simulate(dataset, dest = "RxODE")` threw an error with unexpected message.
  Expected match: "name is length 2. Should be 1."
  Actual message: "Simulation engine 'RxODE' is not installed"
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at testSimulateWeirdCases.R:41:2
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. ├─model %>% simulate(dataset, dest = "RxODE")
   7. └─campsis::simulate(., dataset, dest = "RxODE")
   8.   └─campsis:::preprocessDest(dest)
  ── Failure (testSimulateWeirdCases.R:54:3): Simulate a dataset which is not valid ──
  `model %>% simulate(dataset, dest = "RxODE")` threw an error with unexpected message.
  Expected match: "amount is length 2. Should be 1."
  Actual message: "Simulation engine 'RxODE' is not installed"
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at testSimulateWeirdCases.R:54:2
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. ├─model %>% simulate(dataset, dest = "RxODE")
   7. └─campsis::simulate(., dataset, dest = "RxODE")
   8.   └─campsis:::preprocessDest(dest)
  
  [ FAIL 44 | WARN 0 | SKIP 25 | PASS 289 ]
  Error: Test failures
  Execution halted