Package suggested but not available for checking: 'NFPdata'
Running 'testthat.R' [14s/17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  == Failed tests ================================================================
  -- Error (test-NFP.R:13:1): (code run outside of `test_that()`) ----------------
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       x
    1. +-... %>% nodes_standard at test-NFP.R:13:0
    2. +-NFP nodes_standard(.)
    3. | +-stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. | | \-stringi::stri_replace_all_regex(...)
    5. | \-graph::nodes(x)
    6. +-KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. | \-KEGGgraph::parseKGML(file)
    8. |   \-base::tryCatch(...)
    9. |     \-base tryCatchList(expr, classes, parentenv, handlers)
   10. |       \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. |         \-value[[3L]](cond)
   12. \-base::.handleSimpleError(...)
   13.   \-base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Running ‘testthat.R’ [11s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Running ‘testthat.R’ [19s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Running ‘testthat.R’ [19s/76s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: 'NFPdata'
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Running ‘testthat.R’ [14s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Running ‘testthat.R’ [13s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Package suggested but not available for checking: ‘NFPdata’
Package suggested but not available for checking: 'NFPdata'
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       ▆
    1. ├─... %>% nodes_standard at test-NFP.R:13:0
    2. ├─NFP nodes_standard(.)
    3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. │ │ └─stringi::stri_replace_all_regex(...)
    5. │ └─graph::nodes(x)
    6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. │ └─KEGGgraph::parseKGML(file)
    8. │   └─base::tryCatch(...)
    9. │     └─base tryCatchList(expr, classes, parentenv, handlers)
   10. │       └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. │         └─value[[3L]](cond)
   12. └─base::.handleSimpleError(...)
   13.   └─base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
Package suggested but not available for checking: ‘NFPdata’
Package suggested but not available for checking: ‘NFPdata’
Package suggested but not available for checking: 'NFPdata'
Running 'testthat.R' [18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NFP)
  Loading required package: graph
  Loading required package: BiocGenerics
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated, append,
      as.data.frame, basename, cbind, colnames, dirname, do.call,
      duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
      lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
      pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
      tapply, union, unique, unsplit, which.max, which.min
  
  > test_check('NFP')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  
  == Failed tests ================================================================
  -- Error (test-NFP.R:13:1): (code run outside of `test_that()`) ----------------
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
  Backtrace:
       x
    1. +-... %>% nodes_standard at test-NFP.R:13:0
    2. +-NFP nodes_standard(.)
    3. | +-stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
    4. | | \-stringi::stri_replace_all_regex(...)
    5. | \-graph::nodes(x)
    6. +-KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
    7. | \-KEGGgraph::parseKGML(file)
    8. |   \-base::tryCatch(...)
    9. |     \-base tryCatchList(expr, classes, parentenv, handlers)
   10. |       \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11. |         \-value[[3L]](cond)
   12. \-base::.handleSimpleError(...)
   13.   \-base h(simpleError(msg, call))
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted