'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Running examples in 'MAFDash-Ex.R' failed
The error most likely occurred in:

> ### Name: compute_exome_coverage
> ### Title: Compute exome coverage from a region file
> ### Aliases: compute_exome_coverage
> 
> ### ** Examples
> 
> library(MAFDash)
> bedFile <- system.file("extdata", "test.bed", package = "MAFDash")
> coverage<-compute_exome_coverage(bedFile)
Error in ..Internal(is.unsorted(x, FALSE)) : 
  2 arguments passed to .Internal(is.unsorted) which requires 3
Calls: compute_exome_coverage ... <Anonymous> -> .splitAsList_by_integer_Rle -> <Anonymous>
Execution halted
'LazyData' is specified without a 'data' directory
Running examples in 'MAFDash-Ex.R' failed
The error most likely occurred in:

> ### Name: compute_exome_coverage
> ### Title: Compute exome coverage from a region file
> ### Aliases: compute_exome_coverage
> 
> ### ** Examples
> 
> library(MAFDash)
> bedFile <- system.file("extdata", "test.bed", package = "MAFDash")
> coverage<-compute_exome_coverage(bedFile)
Error in ..Internal(is.unsorted(x, FALSE)) : 
  2 arguments passed to .Internal(is.unsorted) which requires 3
Calls: compute_exome_coverage ... <Anonymous> -> .splitAsList_by_integer_Rle -> <Anonymous>
Execution halted
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
'LazyData' is specified without a 'data' directory
Packages required but not available: 'TCGAbiolinks', 'maftools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
'LazyData' is specified without a 'data' directory
Packages required but not available: 'TCGAbiolinks', 'maftools'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    include   1.1Mb
    libs      2.5Mb
installed size is  5.2Mb
  sub-directories of 1Mb or more:
    include   1.1Mb
    libs      2.3Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    include   1.1Mb
    libs      2.2Mb
installed size is  5.1Mb
  sub-directories of 1Mb or more:
    include   1.1Mb
    libs      2.2Mb