Error(s) in re-building vignettes:
  ...
--- re-building 'SNPassoc.Rmd' using rmarkdown

Registered S3 method overwritten by 'SNPassoc':
  method            from       
  summary.haplo.glm haplo.stats
Warning in par(old.mfrow) :
  argument 1 does not name a graphical parameter
Warning in par(old.mfrow) :
  argument 1 does not name a graphical parameter
Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
  'drop' argument will be ignored
Warning in par(old.las) :
  argument 1 does not name a graphical parameter

 *** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...

 *** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Warning in mclapply(data[, colSNPs, drop = FALSE], snp, sep = sep, ...) :
  scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Quitting from lines 142-145 (SNPassoc.Rmd) 
Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
arguments imply differing number of rows: 1578, 0
--- failed re-building 'SNPassoc.Rmd'

SUMMARY: processing the following file failed:
  'SNPassoc.Rmd'

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘SNPassoc.Rmd’ using rmarkdown

Registered S3 method overwritten by 'SNPassoc':
  method            from       
  summary.haplo.glm haplo.stats
Warning in par(old.mfrow) :
  argument 1 does not name a graphical parameter
OMP: Warning #96: Cannot form a team with 15 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Warning in par(old.mfrow) :
  argument 1 does not name a graphical parameter
Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
  'drop' argument will be ignored
Warning in par(old.las) :
  argument 1 does not name a graphical parameter

 *** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...

 *** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Warning in mclapply(data[, colSNPs, drop = FALSE], snp, sep = sep, ...) :
  scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Quitting from lines 142-145 (SNPassoc.Rmd) 
Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
arguments imply differing number of rows: 1578, 0
--- failed re-building ‘SNPassoc.Rmd’

SUMMARY: processing the following file failed:
  ‘SNPassoc.Rmd’

Error: Vignette re-building failed.
Execution halted
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Package suggested but not available for checking: 'MafDb.1Kgenomes.phase3.GRCh38'
Packages suggested but not available for checking:
  'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38',
  'BSgenome.Hsapiens.NCBI.GRCh38', 'GenomicScores'
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Packages suggested but not available for checking:
  'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38',
  'BSgenome.Hsapiens.NCBI.GRCh38'
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Package suggested but not available for checking: 'MafDb.1Kgenomes.phase3.GRCh38'
Packages suggested but not available for checking:
  'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38'
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Packages suggested but not available for checking:
  'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38'
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Package suggested but not available for checking: 'MafDb.1Kgenomes.phase3.GRCh38'