Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/lass0/lass0.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.

Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/RefFreeEWAS/RefFreeEWAS.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.
Running examples in ‘RefFreeEWAS-Ex.R’ failed
The error most likely occurred in:

> ### Name: RefFreeCellMixInitializeBySVD
> ### Title: Initialize Reference-Free Cell Mixture Projection by SVD
> ### Aliases: RefFreeCellMixInitializeBySVD
> 
> ### ** Examples
> 
> data(HNSCC)
> Y.shortTest <- Y.HNSCC.averageBetas[1:500,]
> mu.start.svd <- RefFreeCellMixInitializeBySVD(Y.shortTest)
> testArray2  <- RefFreeCellMixArrayWithCustomStart(Y.shortTest, mu.start=mu.start.svd,
+     Klist=1:3,iters=5)
Fitting K = 1 
Fitting K = 2 
Error in solve.QP(Dmat, t(Xmat[obs, ]) %*% Y[obs, i], Amat, b0vec) : 
  constraints are inconsistent, no solution!
Calls: RefFreeCellMixArrayWithCustomStart -> RefFreeCellMix -> projectMix -> solve.QP
Execution halted

Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/rijkspalette/rijkspalette.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.

Found the following significant warnings:
  WARNING: installation-time patches will not be applied, could not get the patches index
See 'C:/msys64/home/tomas/ucrt3/svn/ucrt3/r_packages/pkgcheck/CRAN/slga/slga.Rcheck/00install.out' for details.
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
Re-running with no redirection of stdout/stderr.