Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/flashlighttext.Rcheck/00install.out’ for details.
Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-devel/flashlighttext.Rcheck/00install.out’ for details.
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    libs   2.3Mb
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    libs   2.3Mb
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    libs   2.3Mb

GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
installed size is  7.2Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   3.2Mb
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Note: found 1 marked UTF-8 string
GNU make is a SystemRequirements.
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Note: found 1 marked UTF-8 string
GNU make is a SystemRequirements.
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   2.6Mb
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
GNU make is a SystemRequirements.
installed size is 49.4Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs  45.5Mb
GNU make is a SystemRequirements.
installed size is 47.7Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs  43.8Mb
GNU make is a SystemRequirements.
installed size is  6.5Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   2.6Mb
GNU make is a SystemRequirements.
installed size is 49.4Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs  45.5Mb
GNU make is a SystemRequirements.
installed size is 49.4Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs  45.5Mb
GNU make is a SystemRequirements.
installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc    1.9Mb
    libs   2.6Mb
GNU make is a SystemRequirements.

Package suggested but not available for checking: ‘ggmsa’
Error(s) in re-building vignettes:
  ...
--- re-building ‘PIgLET-vignette.Rmd’ using rmarkdown

Quitting from lines 405-425 [nuc-plot] (PIgLET-vignette.Rmd)
Error: processing vignette 'PIgLET-vignette.Rmd' failed with diagnostics:
there is no package called 'ggmsa'
--- failed re-building ‘PIgLET-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘PIgLET-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted
Packages required and available but unsuitable versions:
  'Biostrings', 'DECIPHER'

Package suggested but not available for checking: ‘ggmsa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Packages required and available but unsuitable versions:
  'Biostrings', 'DECIPHER'

Package suggested but not available for checking: ‘ggmsa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.