Running examples in 'algaeClassify-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: phyto_ts_aggregate
> ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
> ###   grouping variables can be given: e.g. genus, species, stationid,
> ###   depth range. If no abundance var is given, will aggregate to
> ###   presence/absence of grouping vars.
> ### Aliases: phyto_ts_aggregate
> 
> ### ** Examples
> 
> data(lakegeneva)
> lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
> lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
+                              GroupingVar1='genus')
Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
Execution halted
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: phyto_ts_aggregate
> ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
> ###   grouping variables can be given: e.g. genus, species, stationid,
> ###   depth range. If no abundance var is given, will aggregate to
> ###   presence/absence of grouping vars.
> ### Aliases: phyto_ts_aggregate
> 
> ### ** Examples
> 
> data(lakegeneva)
> lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
> lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
+                              GroupingVar1='genus')
Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
Execution halted
Namespace in Imports field not imported from: ‘taxize’
  All declared Imports should be used.
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:

> ### Name: phyto_ts_aggregate
> ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
> ###   grouping variables can be given: e.g. genus, species, stationid,
> ###   depth range. If no abundance var is given, will aggregate to
> ###   presence/absence of grouping vars.
> ### Aliases: phyto_ts_aggregate
> 
> ### ** Examples
> 
> data(lakegeneva)
> lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
> lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
+                              GroupingVar1='genus')
Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
Execution halted
Namespace in Imports field not imported from: ‘taxize’
  All declared Imports should be used.
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:

> ### Name: phyto_ts_aggregate
> ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
> ###   grouping variables can be given: e.g. genus, species, stationid,
> ###   depth range. If no abundance var is given, will aggregate to
> ###   presence/absence of grouping vars.
> ### Aliases: phyto_ts_aggregate
> 
> ### ** Examples
> 
> data(lakegeneva)
> lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
> lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
+                              GroupingVar1='genus')
Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
Execution halted
Running examples in 'algaeClassify-Ex.R' failed
The error most likely occurred in:

> ### Name: phyto_ts_aggregate
> ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
> ###   grouping variables can be given: e.g. genus, species, stationid,
> ###   depth range. If no abundance var is given, will aggregate to
> ###   presence/absence of grouping vars.
> ### Aliases: phyto_ts_aggregate
> 
> ### ** Examples
> 
> data(lakegeneva)
> lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
> lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
+                              GroupingVar1='genus')
Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
Execution halted
Namespace in Imports field not imported from: 'taxize'
  All declared Imports should be used.
Running examples in 'algaeClassify-Ex.R' failed
The error most likely occurred in:

> ### Name: phyto_ts_aggregate
> ### Title: Aggregate phytoplankton timeseries based on abundance. Up to 3
> ###   grouping variables can be given: e.g. genus, species, stationid,
> ###   depth range. If no abundance var is given, will aggregate to
> ###   presence/absence of grouping vars.
> ### Aliases: phyto_ts_aggregate
> 
> ### ** Examples
> 
> data(lakegeneva)
> lakegeneva<-genus_species_extract(lakegeneva,'phyto_name')
> lg.genera=phyto_ts_aggregate(lakegeneva,SummaryType='presence.absence',
+                              GroupingVar1='genus')
Error in aggregate.formula(formula = agg.func, data = phyto.data, FUN = fun) : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: phyto_ts_aggregate -> <Anonymous> -> aggregate.formula
Execution halted
Namespace in Imports field not imported from: ‘taxize’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘taxize’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘taxize’
  All declared Imports should be used.